Package: crlmm 1.65.1
crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.
Authors:
crlmm_1.65.1.tar.gz
crlmm_1.65.1.zip(r-4.5)crlmm_1.65.1.zip(r-4.4)crlmm_1.65.1.zip(r-4.3)
crlmm_1.65.1.tgz(r-4.5-x86_64)crlmm_1.65.1.tgz(r-4.5-arm64)crlmm_1.65.1.tgz(r-4.4-x86_64)crlmm_1.65.1.tgz(r-4.4-arm64)crlmm_1.65.1.tgz(r-4.3-x86_64)crlmm_1.65.1.tgz(r-4.3-arm64)
crlmm_1.65.1.tar.gz(r-4.5-noble)crlmm_1.65.1.tar.gz(r-4.4-noble)
crlmm_1.65.1.tgz(r-4.4-emscripten)crlmm_1.65.1.tgz(r-4.3-emscripten)
crlmm.pdf |crlmm.html✨
crlmm/json (API)
NEWS
# Install 'crlmm' in R: |
install.packages('crlmm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- cnSetExample - Object of class 'CNSet'
- cnSetExample2 - Object of class 'CNSet'
On BioConductor:crlmm-1.65.0(bioc 3.21)crlmm-1.64.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraypreprocessingsnpcopynumbervariation
Last updated 23 days agofrom:9b175a9b79. Checks:3 ERROR, 9 WARNING. Indexed: yes.
Target | Result | Latest binary |
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Doc / Vignettes | FAIL | Mar 05 2025 |
R-4.5-win-x86_64 | WARNING | Mar 05 2025 |
R-4.5-mac-x86_64 | WARNING | Mar 05 2025 |
R-4.5-mac-aarch64 | WARNING | Mar 05 2025 |
R-4.5-linux-x86_64 | ERROR | Mar 05 2025 |
R-4.4-win-x86_64 | WARNING | Mar 05 2025 |
R-4.4-mac-x86_64 | WARNING | Mar 05 2025 |
R-4.4-mac-aarch64 | WARNING | Mar 05 2025 |
R-4.4-linux-x86_64 | ERROR | Mar 05 2025 |
R-4.3-win-x86_64 | WARNING | Mar 05 2025 |
R-4.3-mac-x86_64 | WARNING | Mar 05 2025 |
R-4.3-mac-aarch64 | WARNING | Mar 05 2025 |
Exports:AABpanelBBafLrrSetListCAcalculateRBafCBcelDatescnrmaAffyconstructAffyCNSetcorrcrlmmcrlmm2crlmmCopynumbercrlmmCopynumber2crlmmCopynumberLDcrlmmIlluminagenotypegenotype.Illuminagenotype2genotypeAffygenotypeLDgenotypesmadsmediansNsnuAnuBOligoSetListphiAphiBplotSamplesplotSNPsposteriorProbabilitypredictionRegionrawCopynumberreadGenCallOutputreadIdatFilessnprmasnprma2snprmaAffytau2totalCopynumbervalidCdfNamesvalidCELxyplot
Dependencies:abindaffyioaskpassbase64beanplotBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayellipsefastmapffforeachgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrilluminaioIRangesiteratorsjsonlitelatticelifecyclelimmaMatrixMatrixGenericsmatrixStatsmemoisemimemvtnormoligoClassesopensslpkgconfigplogrpreprocessCoreR6RcppRcppEigenrlangRSQLiteS4ArraysS4VectorsSparseArraystatmodSummarizedExperimentsysUCSC.utilsvctrsVGAMXVector