# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "crlmm" in publications use:'
type: software
license: Artistic-2.0
title: 'crlmm: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix
  SNP 5.0 and 6.0 and Illumina arrays'
version: 1.63.0
abstract: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well
  as a copy number tool specific to 5.0, 6.0, and Illumina platforms.
authors:
- family-names: Carvalho
  given-names: Benilton S
  email: benilton@unicamp.br
- family-names: Scharpf
  given-names: Robert
  email: rscharpf@jhsph.edu
- family-names: Ritchie
  given-names: Matt
  email: mritchie@wehi.EDU.AU
- family-names: Ruczinski
  given-names: Ingo
- family-names: Irizarry
  given-names: Rafael A
preferred-citation:
  type: article
  title: Quantifying uncertainty in genotype calls
  authors:
  - family-names: Carvalho
    given-names: Benilton S
    email: benilton@unicamp.br
  - family-names: Louis
    given-names: Thomas A
  - family-names: Irizarry
    given-names: Rafael A
  journal: Bioinformatics
  year: '2010'
  volume: 15;26(2)
  start: 242-9
repository: https://bioc.r-universe.dev
contact:
- family-names: Carvalho
  given-names: Benilton S
  email: benilton@unicamp.br
- family-names: Scharpf
  given-names: Robert
  email: rscharpf@jhsph.edu
- family-names: Ritchie
  given-names: Matt
  email: mritchie@wehi.EDU.AU
references:
- type: article
  title: R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
  authors:
  - family-names: Ritchie
    given-names: Matthew E
  - family-names: Carvalho
    given-names: Benilton S
  - family-names: Hetrick
    given-names: Kurt N
  - family-names: Tavar'e
    given-names: Simon
  - family-names: Irizarry
    given-names: Rafael A
  journal: Bioinformatics
  year: '2009'
  volume: 25(19)
  start: 2621-3
- type: article
  title: A multilevel model to address batch effects in copy number estimation using
    SNP arrays
  authors:
  - family-names: Scharpf
    given-names: Robert B
  - family-names: Ruczinski
    given-names: Ingo
  - family-names: Carvalho
    given-names: Benilton
  - family-names: Doan
    given-names: Betty
  - family-names: Chakravarti
    given-names: Aravinda
  - family-names: Irizarry
    given-names: Rafael A
  journal: Biostatistics
  year: '2011'
  volume: '12'
  start: '33'
  end: '50'
- type: article
  title: Using the R Package crlmm for Genotyping and Copy Number Estimation
  authors:
  - family-names: Scharpf
    given-names: Robert B.
  - family-names: Irizarry
    given-names: Rafael A.
  - family-names: Ritchie
    given-names: Matthew E.
  - family-names: Carvalho
    given-names: Benilton
  - family-names: Ruczinski
    given-names: Ingo
  journal: Journal of Statistical Software
  year: '2011'
  volume: '40'
  issue: '12'
  url: http://www.jstatsoft.org/v40/i12/
  start: '1'
  end: '32'