Package: crisprScoreData 1.17.0

Jean-Philippe Fortin

crisprScoreData: Pre-trained models for the crisprScore package

Provides an interface to access pre-trained models for on-target and off-target gRNA activity prediction algorithms implemented in the crisprScore package. Pre-trained model data are stored in the ExperimentHub database. Users should consider using the crisprScore package directly to use and load the pre-trained models.

Authors:Jean-Philippe Fortin [aut, cre, cph]

crisprScoreData_1.17.0.tar.gz
crisprScoreData_1.17.0.tar.gz(r-4.7-any)crisprScoreData_1.17.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
crisprScoreData/json (API)

# Install 'crisprScoreData' in R:

install.packages('crisprScoreData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprscoredata/issues

On BioConductor:crisprScoreData-1.17.0(data/experiment 3.24)crisprScoreData-1.16.0(data/experiment 3.23)

experimenthub homo_sapiens_data bioconductor bioconductor-package crispr crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences scoring-models sgrna sgrna-design datapkg

4.78 score 2 stars 5 packages 6 scripts 9 exports 58 dependencies

Last updated from:1a3af4f5fd. Checks:1 WARNING, 3 ERROR. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	134
linux-devel	ERROR	284
source / vignettes	ERROR	203
linux-release	ERROR	211

Exports:CRISPRa_model.pkl CRISPRi_model.pkl DeepWt_T7.hdf5 DeepWt_U6.hdf5 DeepWt.hdf5 esp_rnn_model.hdf5 hf_rnn_model.hdf5 Model_weights.pkl RFcombined.rds

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr digest dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Pretrained models for several crisprScore prediction algorithms	crisprScoreData-package CRISPRa_model.pkl CRISPRi_model.pkl crisprScoreData DeepWt.hdf5 DeepWt_T7.hdf5 DeepWt_U6.hdf5 esp_rnn_model.hdf5 hf_rnn_model.hdf5 Model_weights.pkl RFcombined.rds