Package: combi 1.17.0
Stijn Hawinkel
combi: Compositional omics model based visual integration
This explorative ordination method combines quasi-likelihood estimation, compositional regression models and latent variable models for integrative visualization of several omics datasets. Both unconstrained and constrained integration are available. The results are shown as interpretable, compositional multiplots.
Authors:
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combi.pdf |combi.html✨
combi/json (API)
NEWS
# Install 'combi' in R: |
install.packages('combi', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/centerforstatistics-ugent/combi/issues
- zhangMetabo - Metabolomes of mice that underwent Pulsed Antibiotic Treatment (PAT) and controls
- zhangMetavars - Baseline sample variables of PAT and control mice
- zhangMicrobio - Microbiomes of mice that underwent Pulsed Antibiotic Treatment (PAT) and controls
On BioConductor:combi-1.17.0(bioc 3.20)combi-1.16.0(bioc 3.19)
Last updated 2 months agofrom:125ac6398b
Exports:addLinkcheckMeanVarTrendcombiconvPlotextractCoordsextractDatainflPlot
Dependencies:abindade4alabamaapeaskpassBBBiobaseBiocGenericsbiomformatBiostringscliclustercobscodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydigestfansifarverforeachGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclelimmamagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmgcvmimemulttestmunsellnleqslvnlmenumDerivopensslpermutephyloseqpillarpixmappkgconfigplyrquadprogquantregR6RColorBrewerRcppRcppArmadilloreshape2rhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsscalesspSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsystensortibbleUCSC.utilsutf8vctrsveganviridisLitewithrXVectorzlibbioc