Package: coGPS 1.51.0

Yingying Wei

coGPS: cancer outlier Gene Profile Sets

Gene Set Enrichment Analysis of P-value based statistics for outlier gene detection in dataset merged from multiple studies

Authors:Yingying Wei, Michael Ochs

coGPS_1.51.0.tar.gz
coGPS_1.51.0.zip(r-4.5)coGPS_1.51.0.zip(r-4.4)coGPS_1.51.0.zip(r-4.3)
coGPS_1.51.0.tgz(r-4.4-any)coGPS_1.51.0.tgz(r-4.3-any)
coGPS_1.51.0.tar.gz(r-4.5-noble)coGPS_1.51.0.tar.gz(r-4.4-noble)
coGPS_1.51.0.tgz(r-4.4-emscripten)coGPS_1.51.0.tgz(r-4.3-emscripten)
coGPS.pdf |coGPS.html✨
coGPS/json (API)
NEWS

# Install 'coGPS' in R:
install.packages('coGPS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:coGPS-1.49.0(bioc 3.20)coGPS-1.48.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraydifferentialexpression

3.30 score 1 scripts 212 downloads 5 exports 0 dependencies

Last updated 23 days agofrom:2f7fc3883e. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macNOTEOct 30 2024
R-4.3-winNOTEOct 30 2024
R-4.3-macNOTEOct 30 2024

Exports:PatientSpecificGeneListPCOPApermCOPAplotCOPAPlotTopPCOPA

Dependencies:

coGPS

Rendered fromcoGPS.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Cancer Outlier Gene Profile SetscoGPS-package coGPS
coGPS package internal function.plotCOPA
Patient Specific outlier gene listPatientSpecificGeneList
P-value based outlier gene detectionPCOPA
Calculate PCOPA value for permuationspermCOPA
Plot expression patterns of top ranked genes.PlotTopPCOPA
Sample Data for coGPSCNV_classlab_matched CNV_exprs_matched Exon_classlab_matched Exon_exprs_matched Hs.gmtl.c1 Methy_classlab_matched Methy_exprs_matched