Package: coGPS 1.57.0

Yingying Wei

coGPS: cancer outlier Gene Profile Sets

Gene Set Enrichment Analysis of P-value based statistics for outlier gene detection in dataset merged from multiple studies

Authors:Yingying Wei, Michael Ochs

coGPS_1.57.0.tar.gz
coGPS_1.57.0.zip(r-4.7)coGPS_1.57.0.zip(r-4.6)coGPS_1.57.0.zip(r-4.5)
coGPS_1.57.0.tgz(r-4.6-any)coGPS_1.57.0.tgz(r-4.5-any)
coGPS_1.57.0.tar.gz(r-4.7-any)coGPS_1.57.0.tar.gz(r-4.6-any)
coGPS_1.57.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
coGPS/json (API)
NEWS

# Install 'coGPS' in R:
install.packages('coGPS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:coGPS-1.57.0(bioc 3.24)coGPS-1.56.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraydifferentialexpression

3.30 score 6 scripts 441 downloads 5 exports 0 dependencies

Last updated from:b59311bd07. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR133
linux-devel-x86_64NOTE151
source / vignettesOK199
linux-release-x86_64NOTE101
macos-release-arm64NOTE69
macos-oldrel-arm64NOTE93
windows-develNOTE91
windows-releaseNOTE69
windows-oldrelNOTE65
wasm-releaseOK93

Exports:PatientSpecificGeneListPCOPApermCOPAplotCOPAPlotTopPCOPA

Dependencies:

coGPS

Rendered fromcoGPS.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Cancer Outlier Gene Profile SetscoGPS-package coGPS
coGPS package internal function.plotCOPA
Patient Specific outlier gene listPatientSpecificGeneList
P-value based outlier gene detectionPCOPA
Calculate PCOPA value for permuationspermCOPA
Plot expression patterns of top ranked genes.PlotTopPCOPA
Sample Data for coGPSCNV_classlab_matched CNV_exprs_matched Exon_classlab_matched Exon_exprs_matched Hs.gmtl.c1 Methy_classlab_matched Methy_exprs_matched