Package: chihaya 1.7.0

Aaron Lun

chihaya: Save Delayed Operations to a HDF5 File

Saves the delayed operations of a DelayedArray to a HDF5 file. This enables efficient recovery of the DelayedArray's contents in other languages and analysis frameworks.

Authors:Aaron Lun [cre, aut]

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chihaya.pdf |chihaya.html✨
chihaya/json (API)

# Install 'chihaya' in R:
install.packages('chihaya', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/artifactdb/chihaya-r/issues

Uses libs:
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On BioConductor:chihaya-1.5.1(bioc 3.20)chihaya-1.4.0(bioc 3.19)

dataimportdatarepresentation

4.38 score 16 scripts 198 downloads 13 exports 19 dependencies

Last updated 23 days agofrom:e02b134a5e. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-win-x86_64NOTEOct 30 2024
R-4.5-linux-x86_64NOTEOct 30 2024
R-4.4-win-x86_64NOTEOct 30 2024
R-4.4-mac-x86_64NOTEOct 30 2024
R-4.4-mac-aarch64NOTEOct 30 2024
R-4.3-win-x86_64NOTEOct 30 2024
R-4.3-mac-x86_64NOTEOct 30 2024
R-4.3-mac-aarch64NOTEOct 30 2024

Exports:.labelArrayGroup.labelOperationGroup.loadList.pickArrayType.saveDataset.saveListallowExternalSeedsknownArraysknownOperationsloadDelayedsaveDelayedsaveDelayedObjectvalidate

Dependencies:abindBiocGenericscrayonDelayedArrayHDF5ArrayIRangeslatticeMatrixMatrixGenericsmatrixStatsRcpprhdf5rhdf5filtersRhdf5libS4ArraysS4VectorsSparseArrayXVectorzlibbioc

Saving and reloading DelayedArray objects

Aaron Lun

Rendered fromuserguide.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-09-16
Started: 2021-05-04

Readme and manuals

Help Manual

Help pageTopics
Allow saving of external seedsallowExternalSeeds
Developer utilities for custom extensions.labelArrayGroup .labelOperationGroup .loadList .pickArrayType .saveDataset .saveList chihaya-utils
Get or set loaders for operations/arraysknownArrays knownOperations
Load a DelayedMatrixloadDelayed
Save a DelayedMatrixsaveDelayed
Save a delayed objectsaveDelayedObject saveDelayedObject,DelayedArray-method
Saving other seed classessaveDelayedObject,ANY-method
Saving simple seed classessaveDelayedObject,array-method saveDelayedObject,CsparseMatrix-method
Saving a ConstantArraySeedsaveDelayedObject,ConstantArraySeed-method
Saving a DelayedAbindsaveDelayedObject,DelayedAbind-method
Saving a DelayedApermsaveDelayedObject,DelayedAperm-method
Saving a DelayedNaryIsoOpsaveDelayedObject,DelayedNaryIsoOp-method
Saving a DelayedSetDimnamessaveDelayedObject,DelayedSetDimnames-method
Saving a DelayedSubassignsaveDelayedObject,DelayedSubassign-method
Saving a DelayedSubsetsaveDelayedObject,DelayedSubset-method
Saving a DelayedUnaryIsoOpStacksaveDelayedObject,DelayedUnaryIsoOpStack-method
Saving a DelayedUnaryIsoOpWithArgssaveDelayedObject,DelayedUnaryIsoOpWithArgs-method
Save HDF5-based seedssaveDelayedObject,H5SparseMatrixSeed-method saveDelayedObject,HDF5ArraySeed-method
Validate an artifactvalidate