Package: chihaya 1.13.0

Aaron Lun

chihaya: Save Delayed Operations to a HDF5 File

Saves the delayed operations of a DelayedArray to a HDF5 file. This enables efficient recovery of the DelayedArray's contents in other languages and analysis frameworks.

Authors:Aaron Lun [cre, aut]

chihaya_1.13.0.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
chihaya/json (API)

# Install 'chihaya' in R:

install.packages('chihaya', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/artifactdb/chihaya-r/issues

Uses libs:

curl– Easy-to-use client-side URL transfer library
openssl– Secure Sockets Layer toolkit
c++– GNU Standard C++ Library v3

On BioConductor:chihaya-1.13.0(bioc 3.24)chihaya-1.12.0(bioc 3.23)

dataimport datarepresentation curl openssl cpp

4.20 score 16 scripts 13 exports 22 dependencies

Last updated from:f7b125ee10. Checks:12 NOTE, 1 OK, 1 FAIL. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	190
linux-devel-arm64	NOTE	255
linux-devel-x86_64	NOTE	311
source / vignettes	OK	269
linux-release-arm64	NOTE	245
linux-release-x86_64	NOTE	291
macos-release-arm64	NOTE	169
macos-release-x86_64	NOTE	456
macos-oldrel-arm64	NOTE	163
macos-oldrel-x86_64	NOTE	380
windows-devel	NOTE	345
windows-release	NOTE	353
windows-oldrel	NOTE	362
wasm-release	FAIL	172

Exports:.labelArrayGroup .labelOperationGroup .loadList .pickArrayType .saveDataset .saveList allowExternalSeeds knownArrays knownOperations loadDelayed saveDelayed saveDelayedObject validate

Dependencies:abind BiocGenerics biocmake DelayedArray dir.expiry filelock generics h5mread HDF5Array IRanges lattice Matrix MatrixGenerics matrixStats Rcpp rhdf5 rhdf5filters Rhdf5lib S4Arrays S4Vectors SparseArray XVector

Saving and reloading DelayedArray objects

Motivation | Quick start | More interesting seeds | Session information

Rendered fromuserguide.Rmdusingknitr::rmarkdown

Last update: 2024-09-16
Started: 2021-05-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Allow saving of external seeds	allowExternalSeeds
Developer utilities for custom extensions	.labelArrayGroup .labelOperationGroup .loadList .pickArrayType .saveDataset .saveList chihaya-utils
Get or set loaders for operations/arrays	knownArrays knownOperations
Load a DelayedMatrix	loadDelayed
Save a DelayedMatrix	saveDelayed
Save a delayed object	saveDelayedObject saveDelayedObject,DelayedArray-method
Saving other seed classes	saveDelayedObject,ANY-method
Saving simple seed classes	saveDelayedObject,array-method saveDelayedObject,CsparseMatrix-method
Saving a ConstantArraySeed	saveDelayedObject,ConstantArraySeed-method
Saving a DelayedAbind	saveDelayedObject,DelayedAbind-method
Saving a DelayedAperm	saveDelayedObject,DelayedAperm-method
Saving a DelayedNaryIsoOp	saveDelayedObject,DelayedNaryIsoOp-method
Saving a DelayedSetDimnames	saveDelayedObject,DelayedSetDimnames-method
Saving a DelayedSubassign	saveDelayedObject,DelayedSubassign-method
Saving a DelayedSubset	saveDelayedObject,DelayedSubset-method
Saving a DelayedUnaryIsoOpStack	saveDelayedObject,DelayedUnaryIsoOpStack-method
Saving a DelayedUnaryIsoOpWithArgs	saveDelayedObject,DelayedUnaryIsoOpWithArgs-method
Save HDF5-based seeds	saveDelayedObject,H5SparseMatrixSeed-method saveDelayedObject,HDF5ArraySeed-method
Validate an artifact	validate