Package: cfToolsData 1.11.0
Ran Hu
cfToolsData: ExperimentHub data for the cfTools package
The cfToolsData package supplies the data for the cfTools package. It contains two pre-trained deep neural network (DNN) models for the cfSort function. Additionally, it includes the shape parameters of beta distribution characterizing methylation markers associated with four tumor types for the CancerDetector function, as well as the parameters characterizing methylation markers specific to 29 primary human tissue types for the cfDeconvolve function.
Authors:
cfToolsData_1.11.0.tar.gz
cfToolsData_1.11.0.tar.gz(r-4.7-any)cfToolsData_1.11.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
cfToolsData/json (API)
| # Install 'cfToolsData' in R: |
| install.packages('cfToolsData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jasminezhoulab/cftoolsdata/issues
On BioConductor:cfToolsData-1.11.0(data/experiment 3.24)cfToolsData-1.10.0(data/experiment 3.23)
experimenthubexperimentdatareproducibleresearchdiseasemodelcancerdatatissuedatapkg
Last updated from:7ac0856c4c. Checks:1 NOTE, 3 ERROR. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 172 | ||
| linux-devel | ERROR | -3289 | ||
| source / vignettes | ERROR | 285 | ||
| linux-release | ERROR | -3305 |
Exports:COAD.tumorMarkerParams.hg19DNN1DNN2LIHC.tumorMarkerParams.hg19LUNG.tumorMarkerParams.hg19STAD.tumorMarkerParams.hg19tissueMarkerParams.annottissueMarkerParams.hg19
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdigestdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ExperimentHub datasets for the cfTools package | cfToolsData |
| Parameters of COAD markers | COAD.tumorMarkerParams.hg19 |
| Model DNN1 | DNN1 |
| Model DNN2 | DNN2 |
| Parameters of LIHC markers | LIHC.tumorMarkerParams.hg19 |
| Parameters of lung cancer markers | LUNG.tumorMarkerParams.hg19 |
| Parameters of STAD markers | STAD.tumorMarkerParams.hg19 |
| Annotation of tissue markers | tissueMarkerParams.annot |
| Parameters of tissue markers | tissueMarkerParams.hg19 |