Package: cancerclass 1.57.0

Daniel Kosztyla

cancerclass: Development and validation of diagnostic tests from high-dimensional molecular data

The classification protocol starts with a feature selection step and continues with nearest-centroid classification. The accurarcy of the predictor can be evaluated using training and test set validation, leave-one-out cross-validation or in a multiple random validation protocol. Methods for calculation and visualization of continuous prediction scores allow to balance sensitivity and specificity and define a cutoff value according to clinical requirements.

Authors:Jan Budczies, Daniel Kosztyla

cancerclass_1.57.0.tar.gz
cancerclass_1.57.0.zip(r-4.7)cancerclass_1.57.0.zip(r-4.6)cancerclass_1.57.0.zip(r-4.5)
cancerclass_1.57.0.tgz(r-4.6-x86_64)cancerclass_1.57.0.tgz(r-4.6-arm64)cancerclass_1.57.0.tgz(r-4.5-x86_64)cancerclass_1.57.0.tgz(r-4.5-arm64)
cancerclass_1.57.0.tar.gz(r-4.7-arm64)cancerclass_1.57.0.tar.gz(r-4.7-x86_64)cancerclass_1.57.0.tar.gz(r-4.6-arm64)cancerclass_1.57.0.tar.gz(r-4.6-x86_64)
cancerclass_1.57.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
cancerclass/json (API)

# Install 'cancerclass' in R:
install.packages('cancerclass', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:cancerclass-1.57.0(bioc 3.24)cancerclass-1.56.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cancermicroarrayclassificationvisualization

3.60 score 20 scripts 759 downloads 1 mentions 18 exports 4 dependencies

Last updated from:365b9c6dcf. Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR173
linux-devel-arm64NOTE152
linux-devel-x86_64NOTE183
source / vignettesOK187
linux-release-arm64NOTE128
linux-release-x86_64NOTE220
macos-release-arm64WARNING84
macos-release-x86_64WARNING325
macos-oldrel-arm64WARNING98
macos-oldrel-x86_64WARNING242
windows-develNOTE105
windows-releaseNOTE114
windows-oldrelNOTE94
wasm-releaseOK102

Exports:.initFoocalc.auccalc.rocfilterfitget.dget.d2get.lmget.ntrainilogitloonvalidateplotplot3dpredictpreparesummaryvalidate

Dependencies:binomBiobaseBiocGenericsgenerics

Cancerclass: An R package for development and validation of diagnostic tests from high-dimensional molecular data

Rendered fromvignette_cancerclass.Rnwusingutils::Sweaveon May 16 2026.

Last update: 2013-11-01
Started: 2013-11-01