{
  "_id": "6a571a8bff0138dec5d6dc54",
  "Package": "cancerclass",
  "Type": "Package",
  "Version": "1.57.0",
  "Date": "2011-10-26",
  "Title": "Development and validation of diagnostic tests from\nhigh-dimensional molecular data",
  "Author": "Jan Budczies, Daniel Kosztyla",
  "Maintainer": "Daniel Kosztyla <danielkossi@hotmail.com>",
  "Description": "The classification protocol starts with a feature\nselection step and continues with nearest-centroid\nclassification. The accurarcy of the predictor can be evaluated\nusing training and test set validation, leave-one-out\ncross-validation or in a multiple random validation protocol.\nMethods for calculation and visualization of continuous\nprediction scores allow to balance sensitivity and specificity\nand define a cutoff value according to clinical requirements.",
  "License": "GPL 3",
  "biocViews": "Cancer, Microarray, Classification, Visualization",
  "Collate": "validation-class.R nvalidation-class.R prediction-class.R\npredictor-class.R cancerclass-internal.R fit.R loo.R\nnvalidate.R plot3d_nvalidation.R plot3d_validation.R\nplot_nvalidation.R plot_prediction.R plot_predictor.R\nplot_validation.R predict_predictor.R summary_prediction.R\nvalidate.R",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:36:31 UTC",
  "RemoteUrl": "https://github.com/bioc/cancerclass",
  "RemoteRef": "HEAD",
  "RemoteSha": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-15 05:23:56 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "cancerclass_1.57.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/811055f553701801e0cec008645793087b8725cad15fc6428bd2285aec585695",
  "_filesize": 1621929,
  "_sha256": "811055f553701801e0cec008645793087b8725cad15fc6428bd2285aec585695",
  "_expires": "2026-10-23T05:28:41.000Z",
  "_created": "2026-07-15T05:23:56.000Z",
  "_published": "2026-07-15T05:28:43.431Z",
  "_bioccheck": {
    "error": 2,
    "warning": 8,
    "note": 13
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798",
  "_status": "success",
  "_upstream": "https://github.com/bioc/cancerclass",
  "_commit": {
    "id": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379791
  },
  "_maintainer": {
    "name": "Daniel Kosztyla",
    "email": "danielkossi@hotmail.com"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 87275396180,
      "time": 145,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8333403094"
    },
    {
      "job": 87275396201,
      "time": 146,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8333404596"
    },
    {
      "job": 87275396216,
      "time": 148,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8333403949"
    },
    {
      "job": 87275396195,
      "time": 180,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8333413132"
    },
    {
      "job": 87275396202,
      "time": 149,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8333404317"
    },
    {
      "job": 87275396196,
      "time": 112,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8333394498"
    },
    {
      "job": 87275396179,
      "time": 246,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8333429119"
    },
    {
      "job": 87275396183,
      "time": 145,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8333403346"
    },
    {
      "job": 87275396189,
      "time": 164,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8333408349"
    },
    {
      "job": 87275058451,
      "time": 150,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8333364758"
    },
    {
      "job": 87275396197,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8333392956"
    },
    {
      "job": 87275396191,
      "time": 105,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8333392898"
    },
    {
      "job": 87275396199,
      "time": 148,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8333403704"
    },
    {
      "job": 87275396211,
      "time": 102,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8333391962"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.14.0",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Depends"
    },
    {
      "package": "binom",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "cancerdata",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.57.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.56.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "cancer",
    "microarray",
    "classification",
    "visualization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 446,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 756,
    "source": "https://www.bioconductor.org/packages/stats/bioc/cancerclass"
  },
  "_mentions": 1,
  "_searchresults": 26,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/cancerclass.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".initFoo",
    "calc.auc",
    "calc.roc",
    "filter",
    "fit",
    "get.d",
    "get.d2",
    "get.lm",
    "get.ntrain",
    "ilogit",
    "loo",
    "nvalidate",
    "plot",
    "plot3d",
    "predict",
    "prepare",
    "summary",
    "validate"
  ],
  "_datasets": [
    {
      "name": "GOLUB",
      "title": "GOLUB DATA",
      "object": "GOLUB",
      "file": "GOLUB.RData",
      "class": [
        "ExpressionSet"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "GOLUB1",
      "title": "GOLUB DATA",
      "object": "GOLUB1",
      "file": "GOLUB1.RData",
      "class": [
        "ExpressionSet"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "cancerclass-package",
      "title": "Development and validation of diagnostic tests from high-dimensional molecular data",
      "topics": [
        "cancerclass"
      ]
    },
    {
      "page": "fit",
      "title": "Fitting of a predictor",
      "topics": [
        "fit"
      ]
    },
    {
      "page": "GOLUB",
      "title": "GOLUB DATA",
      "topics": [
        "GOLUB",
        "GOLUB1"
      ]
    },
    {
      "page": "loo",
      "title": "Leave-one-out cross-validation",
      "topics": [
        "loo"
      ]
    },
    {
      "page": "nvalidate",
      "title": "Classification in a multiple random validation protocol in pependence of the number of features used for predictor construction",
      "topics": [
        "nvalidate"
      ]
    },
    {
      "page": "nvalidation-class",
      "title": "Class \"nvalidation\"",
      "topics": [
        "nvalidation-class"
      ]
    },
    {
      "page": "plot",
      "title": "Plot Method for 'validation, nvalidation, prediction, predictor' Classes",
      "topics": [
        "plot",
        "plot,nvalidation-method",
        "plot,prediction-method",
        "plot,predictor-method",
        "plot,validation-method"
      ]
    },
    {
      "page": "plot3d",
      "title": "Plot3d method for 'validtion and 'nvalidation' classes",
      "topics": [
        "plot3d",
        "plot3d,nvalidation-method",
        "plot3d,validation-method"
      ]
    },
    {
      "page": "predict,predictor-method",
      "title": "Predict Method for 'predictor' Class",
      "topics": [
        "predict",
        "predict,predictor-method",
        "predict-methods"
      ]
    },
    {
      "page": "prediction-class",
      "title": "Class \"prediction\"",
      "topics": [
        "prediction-class"
      ]
    },
    {
      "page": "predictor-class",
      "title": "Class \"predictor\"",
      "topics": [
        "predictor-class"
      ]
    },
    {
      "page": "summary,prediction-method",
      "title": "Summary Method for 'prediction' Class",
      "topics": [
        "summary",
        "summary,prediction-method"
      ]
    },
    {
      "page": "validate",
      "title": "Classification in a Multiple Random Validation Protocol in Dependence of the Training Set Size",
      "topics": [
        "validate"
      ]
    },
    {
      "page": "validation-class",
      "title": "Class \"validation\"",
      "topics": [
        "validation-class"
      ]
    }
  ],
  "_rundeps": [
    "binom",
    "Biobase",
    "BiocGenerics",
    "generics"
  ],
  "_vignettes": [
    {
      "source": "vignette_cancerclass.Rnw",
      "filename": "vignette_cancerclass.pdf",
      "title": "Cancerclass: An R package for development and validation of diagnostic tests from high-dimensional molecular data",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:25:44",
      "modified": "2013-11-01 20:25:44",
      "commits": 1
    }
  ],
  "_score": 3.7160033436347994,
  "_indexed": true,
  "_nocasepkg": "cancerclass",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.57.0",
      "date": "2026-07-15T05:26:14.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/232348c2746da7a21036947fbbb799a7d23fc5d2005a0cda49f9073079fa770f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.57.0",
      "date": "2026-07-15T05:26:08.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/8b9f32b44e6cb9a0997525ddff32031b4d7ed085e6c22f9b26cf433f1c8cb3f1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.57.0",
      "date": "2026-07-15T05:26:45.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/4eb409afe4a8f7d78bccaa3b1c02be1ab2a4e0c9ce6a397fc617078b3feb33b4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.57.0",
      "date": "2026-07-15T05:26:16.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/87709c9d24d360399e2395403d37b5f681678a21fc5cfa40c1b55896d5067dac",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.57.0",
      "date": "2026-07-15T05:25:33.000Z",
      "arch": "aarch64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/2f41d002e30baffd50447ad37be97aaff8679b33dce476864f2b1d17732c74de",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.57.0",
      "date": "2026-07-15T05:27:01.000Z",
      "arch": "x86_64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/7ea377b21cdba056acc47c7d901d7c75977254f07dc409c53a1ef7dc94406f47",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.57.0",
      "date": "2026-07-15T05:25:58.000Z",
      "arch": "aarch64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/0d88cbc5ea1613eb901612852919ac9a57643323668eec904c0459bab9bd446e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.57.0",
      "date": "2026-07-15T05:26:12.000Z",
      "arch": "x86_64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/d9ec1804cb07af4dd1b3357a2b3be1b6ea7d4539e44de4c231573427095a28a0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.57.0",
      "date": "2026-07-15T05:25:54.000Z",
      "arch": "emscripten",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/c02377be46662b6639f938a2057089eb227498e713715e112b14cd6025d0739f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.57.0",
      "date": "2026-07-15T05:25:01.000Z",
      "arch": "x86_64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/fe466e11c5c867b210215b2340a10f657a7604b55d1bf738a7740fccd0addae1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.57.0",
      "date": "2026-07-15T05:25:51.000Z",
      "arch": "x86_64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/33e804a09774dc560832e37b5664a6b567108651f64949bcd078a8c4dae0cbe8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.57.0",
      "date": "2026-07-15T05:25:04.000Z",
      "arch": "x86_64",
      "commit": "365b9c6dcf1301786e77563b8a6e2c42d41b5200",
      "fileid": "https://r2.ropensci.org/fda70682278f0aa0dc26e58d275a075d730217a3e94dcc1a6c8668bc69adb465",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29391233798"
    }
  ]
}