Package: biocthis 1.23.0

Leonardo Collado-Torres

biocthis: Automate package and project setup for Bioconductor packages

This package expands the usethis package with the goal of helping automate the process of creating R packages for Bioconductor or making them Bioconductor-friendly.

Authors:Leonardo Collado-Torres [aut, cre], Marcel Ramos [ctb]

biocthis_1.23.0.tar.gz
biocthis_1.23.0.zip(r-4.7)biocthis_1.23.0.zip(r-4.6)biocthis_1.23.0.zip(r-4.5)
biocthis_1.23.0.tgz(r-4.6-any)biocthis_1.23.0.tgz(r-4.5-any)
biocthis_1.23.0.tar.gz(r-4.7-any)biocthis_1.23.0.tar.gz(r-4.6-any)
biocthis_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
biocthis/json (API)
NEWS

# Install 'biocthis' in R:
install.packages('biocthis', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lcolladotor/biocthis/issues

On BioConductor:biocthis-1.23.0(bioc 3.24)biocthis-1.22.0(bioc 3.23)

softwarereportwritingactionsbioconductorbiocthisgithubstylerusethis

7.64 score 56 stars 1 packages 5 scripts 698 downloads 23 exports 37 dependencies

Last updated from:54089fa8b2. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING162
linux-devel-x86_64NOTE181
source / vignettesOK208
linux-release-x86_64NOTE217
macos-release-arm64NOTE96
macos-oldrel-arm64NOTE94
windows-develNOTE100
windows-releaseNOTE89
windows-oldrelNOTE95
wasm-releaseOK127

Exports:bioc_stylebiocthis_example_pkguse_bioc_badgesuse_bioc_build_badgeuse_bioc_citationuse_bioc_cocuse_bioc_dependencies_badgeuse_bioc_descriptionuse_bioc_feature_request_templateuse_bioc_github_actionuse_bioc_history_badgeuse_bioc_issue_templateuse_bioc_last_commit_badgeuse_bioc_news_mduse_bioc_pkg_templatesuse_bioc_pkgdown_cssuse_bioc_rank_badgeuse_bioc_readme_rmduse_bioc_supportuse_bioc_support_badgeuse_bioc_vignetteuse_tiny_testuse_tinytest

Dependencies:askpassBiocManagerclicliprcrayoncredentialscurldescdigestfsgertgitcredsgluehttr2inijsonlitelifecyclemagrittropensslpurrrR.cacheR.methodsS3R.ooR.utilsR6rappdirsrlangrprojrootrstudioapistylersysusethisvctrswhiskerwithryamlzip

biocthis developer notes

Leonardo Collado-Torres

Rendered frombiocthis_dev_notes.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-03-03
Started: 2020-05-09

Introduction to biocthis

Leonardo Collado-Torres

Rendered frombiocthis.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-11-01
Started: 2020-04-29

Readme and manuals

Help Manual

Help pageTopics
Add Bioconductor README badgesbioc_badges use_bioc_badges use_bioc_build_badge use_bioc_dependencies_badge use_bioc_history_badge use_bioc_last_commit_badge use_bioc_rank_badge use_bioc_support_badge
Tidyverse style made Bioconductor-friendlybioc_style
Create a temporary example packagebiocthis_example_pkg
Create a biocthis-style CITATION templateuse_bioc_citation
Create a Bioconductor-styled code of conductuse_bioc_coc
Create a biocthis-style DESCRIPTION templateuse_bioc_description
Create a biocthis-style GitHub feature request templateuse_bioc_feature_request_template
Create a biocthis-style GitHub Actions workflowuse_bioc_github_action
Create a biocthis-style GitHub issue templateuse_bioc_issue_template
Create a biocthis-style NEWS.md fileuse_bioc_news_md
Create a biocthis package template R scriptsuse_bioc_pkg_templates
Create a css with Bioconductor colors for pkgdownuse_bioc_pkgdown_css
Create a biocthis-style README.Rmd fileuse_bioc_readme_rmd
Create a biocthis-style GitHub support fileuse_bioc_support
Create a biocthis-style vignette templateuse_bioc_vignette
Use the 'tinytest' framework for unit testsuse_tinytest use_tiny_test