{
  "_id": "6a1adbd41d7bb097a09e91e0",
  "Package": "biocthis",
  "Title": "Automate package and project setup for Bioconductor packages",
  "Version": "1.23.0",
  "Date": "2025-03-18",
  "Authors@R": "c(\nperson(\"Leonardo\", \"Collado-Torres\", role = c(\"aut\", \"cre\"),\nemail = \"lcolladotor@gmail.com\", comment = c(ORCID = \"0000-0003-2140-308X\")),\nperson(\"Marcel\", \"Ramos\", email = \"marcel.ramos@roswellpark.org\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0002-3242-0582\"))\n)",
  "Description": "This package expands the usethis package with the goal of\nhelping automate the process of creating R packages for\nBioconductor or making them Bioconductor-friendly.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "URL": "https://github.com/lcolladotor/biocthis",
  "BugReports": "https://github.com/lcolladotor/biocthis/issues",
  "biocViews": "Software, ReportWriting",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake git make libgit2-dev libuv1-dev libssl-dev\nlibx11-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:54:04 UTC",
  "RemoteUrl": "https://github.com/bioc/biocthis",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 09:11:35 UTC",
    "User": "root"
  },
  "Author": "Leonardo Collado-Torres [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2140-308X>),\nMarcel Ramos [ctb] (ORCID: <https://orcid.org/0000-0002-3242-0582>)",
  "Maintainer": "Leonardo Collado-Torres <lcolladotor@gmail.com>",
  "MD5sum": "4342c73804fc7d5e1a197bf7ca1e7bc2",
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  "_type": "src",
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  "_created": "2026-05-30T09:11:35.000Z",
  "_published": "2026-05-30T12:45:08.911Z",
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    "note": 9
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    "email": "lcolladotor@gmail.com",
    "login": "lcolladotor",
    "bluesky": "@lcolladotor.bsky.social",
    "linkedin": "in/lcollado",
    "twitter": "@lcolladotor",
    "description": "Find more information about myself at my website where I post my recent publications, talks, blog posts and other updates.",
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    "orcid": "0000-0003-2140-308X"
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      "role": "Imports"
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      "role": "Imports"
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      "role": "Imports"
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      "role": "Imports"
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      "role": "Imports"
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      "role": "Suggests"
    },
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      "role": "Suggests"
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      "role": "Suggests"
    },
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  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
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    "actions",
    "bioconductor",
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    "github",
    "styler",
    "usethis"
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  "_contributors": [
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    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
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    "source": "https://www.bioconductor.org/packages/stats/bioc/biocthis"
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  "_rbuild": "4.6.0",
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
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  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
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    "biocthis_example_pkg",
    "use_bioc_badges",
    "use_bioc_build_badge",
    "use_bioc_citation",
    "use_bioc_coc",
    "use_bioc_dependencies_badge",
    "use_bioc_description",
    "use_bioc_feature_request_template",
    "use_bioc_github_action",
    "use_bioc_history_badge",
    "use_bioc_issue_template",
    "use_bioc_last_commit_badge",
    "use_bioc_news_md",
    "use_bioc_pkg_templates",
    "use_bioc_pkgdown_css",
    "use_bioc_rank_badge",
    "use_bioc_readme_rmd",
    "use_bioc_support",
    "use_bioc_support_badge",
    "use_bioc_vignette",
    "use_tiny_test",
    "use_tinytest"
  ],
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      "title": "Add Bioconductor README badges",
      "topics": [
        "bioc_badges",
        "use_bioc_badges",
        "use_bioc_build_badge",
        "use_bioc_dependencies_badge",
        "use_bioc_history_badge",
        "use_bioc_last_commit_badge",
        "use_bioc_rank_badge",
        "use_bioc_support_badge"
      ]
    },
    {
      "page": "bioc_style",
      "title": "Tidyverse style made Bioconductor-friendly",
      "topics": [
        "bioc_style"
      ]
    },
    {
      "page": "biocthis_example_pkg",
      "title": "Create a temporary example package",
      "topics": [
        "biocthis_example_pkg"
      ]
    },
    {
      "page": "use_bioc_citation",
      "title": "Create a biocthis-style CITATION template",
      "topics": [
        "use_bioc_citation"
      ]
    },
    {
      "page": "use_bioc_coc",
      "title": "Create a Bioconductor-styled code of conduct",
      "topics": [
        "use_bioc_coc"
      ]
    },
    {
      "page": "use_bioc_description",
      "title": "Create a biocthis-style DESCRIPTION template",
      "topics": [
        "use_bioc_description"
      ]
    },
    {
      "page": "use_bioc_feature_request_template",
      "title": "Create a biocthis-style GitHub feature request template",
      "topics": [
        "use_bioc_feature_request_template"
      ]
    },
    {
      "page": "use_bioc_github_action",
      "title": "Create a biocthis-style GitHub Actions workflow",
      "topics": [
        "use_bioc_github_action"
      ]
    },
    {
      "page": "use_bioc_issue_template",
      "title": "Create a biocthis-style GitHub issue template",
      "topics": [
        "use_bioc_issue_template"
      ]
    },
    {
      "page": "use_bioc_news_md",
      "title": "Create a biocthis-style NEWS.md file",
      "topics": [
        "use_bioc_news_md"
      ]
    },
    {
      "page": "use_bioc_pkg_templates",
      "title": "Create a biocthis package template R scripts",
      "topics": [
        "use_bioc_pkg_templates"
      ]
    },
    {
      "page": "use_bioc_pkgdown_css",
      "title": "Create a css with Bioconductor colors for pkgdown",
      "topics": [
        "use_bioc_pkgdown_css"
      ]
    },
    {
      "page": "use_bioc_readme_rmd",
      "title": "Create a biocthis-style README.Rmd file",
      "topics": [
        "use_bioc_readme_rmd"
      ]
    },
    {
      "page": "use_bioc_support",
      "title": "Create a biocthis-style GitHub support file",
      "topics": [
        "use_bioc_support"
      ]
    },
    {
      "page": "use_bioc_vignette",
      "title": "Create a biocthis-style vignette template",
      "topics": [
        "use_bioc_vignette"
      ]
    },
    {
      "page": "use_tinytest",
      "title": "Use the 'tinytest' framework for unit tests",
      "topics": [
        "use_tinytest",
        "use_tiny_test"
      ]
    }
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  "_rundeps": [
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    "usethis",
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    "whisker",
    "withr",
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    "zip"
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      "author": "Leonardo Collado-Torres",
      "engine": "knitr::rmarkdown",
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        "biocthis developer notes",
        "Backstory",
        "Styling code",
        "GitHub Actions",
        "Motivation",
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        "Potential future additions",
        "Wrapping up",
        "usethis-like functions",
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        "Bibliography"
      ],
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      "title": "Introduction to biocthis",
      "author": "Leonardo Collado-Torres",
      "engine": "knitr::rmarkdown",
      "headings": [
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        "Install biocthis",
        "Required knowledge",
        "Asking for help",
        "Citing biocthis",
        "Quick start to using to biocthis",
        "Using biocthis in your R package",
        "biocthis functions overview",
        "use_bioc_badges()",
        "bioc_style()",
        "use_bioc_citation()",
        "use_bioc_description()",
        "use_bioc_feature_request_template()",
        "use_bioc_github_action()",
        "Getting started",
        "Main GHA workflow features",
        "Additional features",
        "Configure options",
        "Automatically scheduled tests",
        "Notes about GHA workflows",
        "use_bioc_issue_template()",
        "use_bioc_news_md()",
        "use_bioc_pkg_templates()",
        "use_bioc_pkgdown_css()",
        "use_bioc_readme_rmd()",
        "use_bioc_support()",
        "use_bioc_vignette()",
        "Acknowledgments",
        "Reproducibility",
        "Bibliography"
      ],
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      "modified": "2022-11-01 20:48:44",
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