Package: biobtreeR 1.25.1

Tamer Gur
biobtreeR: Using biobtree tool from R
The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.
Authors:
biobtreeR_1.25.1.tar.gz
biobtreeR_1.25.1.zip(r-4.7)biobtreeR_1.25.1.zip(r-4.6)biobtreeR_1.25.1.zip(r-4.5)
biobtreeR_1.25.1.tgz(r-4.6-any)biobtreeR_1.25.1.tgz(r-4.5-any)
biobtreeR_1.25.1.tar.gz(r-4.7-any)biobtreeR_1.25.1.tar.gz(r-4.6-any)
biobtreeR_1.25.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
biobtreeR/json (API)
| # Install 'biobtreeR' in R: |
| install.packages('biobtreeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tamerh/biobtreer/issues
On BioConductor:biobtreeR-1.25.1(bioc 3.24)biobtreeR-1.24.0(bioc 3.23)
Last updated from:dc3de30922. Checks:9 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 141 | ||
| linux-devel-x86_64 | ERROR | 187 | ||
| source / vignettes | ERROR | 189 | ||
| linux-release-x86_64 | ERROR | 158 | ||
| macos-release-arm64 | ERROR | 104 | ||
| macos-oldrel-arm64 | ERROR | 79 | ||
| windows-devel | ERROR | 109 | ||
| windows-release | ERROR | 124 | ||
| windows-oldrel | ERROR | 72 | ||
| wasm-release | OK | 108 |
Exports:bbBuildCustomDBbbBuiltInDBbbEntrybbEntryFilterbbEntryPagebbListAttrsbbListDatasetsbbMappingbbSearchbbStartbbStopbbUseOutDir
Dependencies:askpassclicurlfastmaphttpuvhttrjsonlitelaterlifecyclemagrittrmimeopensslotelpromisesR6Rcpprlangstringisys
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Build custom DB | bbBuildCustomDB |
| Get pre build biobtree database | bbBuiltInDB |
| Class for biobtreeR config | bbConfig-class |
| Retrieve entry | bbEntry |
| Retrieve entry with filtered dataset | bbEntryFilter |
| Retrieve entry result page | bbEntryPage |
| Retrieve attributes of dataset | bbListAttrs |
| List available datasets | bbListDatasets |
| Chain mapping and filtering | bbMapping |
| Search identifiers or special keywords | bbSearch |
| Start biobtreeR | bbStart |
| Stop biobtree | bbStop |
| Output directory for biobtreeR | bbUseOutDir |