Package: biobtreeR 1.17.0
![](https://r-universe.dev/static/nobody.jpg)
Tamer Gur
biobtreeR: Using biobtree tool from R
The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.
Authors:
biobtreeR_1.17.0.tar.gz
biobtreeR_1.17.0.zip(r-4.5)biobtreeR_1.17.0.zip(r-4.4)biobtreeR_1.17.0.zip(r-4.3)
biobtreeR_1.17.0.tgz(r-4.4-any)biobtreeR_1.17.0.tgz(r-4.3-any)
biobtreeR_1.17.0.tar.gz(r-4.5-noble)biobtreeR_1.17.0.tar.gz(r-4.4-noble)
biobtreeR_1.17.0.tgz(r-4.4-emscripten)biobtreeR_1.17.0.tgz(r-4.3-emscripten)
biobtreeR.pdf |biobtreeR.html✨
biobtreeR/json (API)
# Install 'biobtreeR' in R: |
install.packages('biobtreeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tamerh/biobtreer/issues
On BioConductor:biobtreeR-1.17.0(bioc 3.20)biobtreeR-1.16.0(bioc 3.19)
Last updated 2 months agofrom:816d5019af
Exports:bbBuildCustomDBbbBuiltInDBbbEntrybbEntryFilterbbEntryPagebbListAttrsbbListDatasetsbbMappingbbSearchbbStartbbStopbbUseOutDir
Dependencies:askpasscurlfastmaphttpuvhttrjsonlitelatermagrittrmimeopensslpromisesR6Rcpprlangstringisys
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Build custom DB | bbBuildCustomDB |
Get pre build biobtree database | bbBuiltInDB |
Class for biobtreeR config | bbConfig-class |
Retrieve entry | bbEntry |
Retrieve entry with filtered dataset | bbEntryFilter |
Retrieve entry result page | bbEntryPage |
Retrieve attributes of dataset | bbListAttrs |
List available datasets | bbListDatasets |
Chain mapping and filtering | bbMapping |
Search identifiers or special keywords | bbSearch |
Start biobtreeR | bbStart |
Stop biobtree | bbStop |
Output directory for biobtreeR | bbUseOutDir |