Package: bioDist 1.79.0
Bioconductor Package Maintainer
bioDist: Different distance measures
A collection of software tools for calculating distance measures.
Authors:
bioDist_1.79.0.tar.gz
bioDist_1.79.0.zip(r-4.5)bioDist_1.79.0.zip(r-4.4)bioDist_1.79.0.zip(r-4.3)
bioDist_1.79.0.tgz(r-4.4-any)bioDist_1.79.0.tgz(r-4.3-any)
bioDist_1.79.0.tar.gz(r-4.5-noble)bioDist_1.79.0.tar.gz(r-4.4-noble)
bioDist_1.79.0.tgz(r-4.4-emscripten)bioDist_1.79.0.tgz(r-4.3-emscripten)
bioDist.pdf |bioDist.html✨
bioDist/json (API)
| # Install 'bioDist' in R: |
| install.packages('bioDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:bioDist-1.77.0(bioc 3.20)bioDist-1.76.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 23 days agofrom:a6341281aa. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 30 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | NOTE | Oct 30 2024 |
| R-4.3-mac | NOTE | Oct 30 2024 |
Exports:closest.topcor.disteucKLD.matrixKLdist.matrixmanMIdistmutualInfospearman.disttau.dist
Dependencies:BiobaseBiocGenericsKernSmooth
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Find the closest genes. | closest.top |
| Pearson correlational distance | cor.dist cor.dist,eSet-method cor.dist,matrix-method |
| Euclidean distance | euc euc,eSet-method euc,matrix-method |
| Continuous version of Kullback-Leibler Distance (KLD) | KLD.matrix KLD.matrix,eSet-method KLD.matrix,list-method KLD.matrix,matrix-method |
| Discrete version of Kullback-Leibler Distance (KLD) | KLdist.matrix KLdist.matrix,eSet-method KLdist.matrix,list-method KLdist.matrix,matrix-method |
| Manhattan distance | man man,eSet-method man,matrix-method |
| Mutual Information | MIdist MIdist,ExpressionSet-method MIdist,matrix-method mutualInfo mutualInfo,ExpressionSet-method mutualInfo,matrix-method |
| Spearman correlational distance | spearman.dist spearman.dist,ExpressionSet-method spearman.dist,matrix-method |
| Kendall's tau correlational distance | tau.dist tau.dist,ExpressionSet-method tau.dist,matrix-method |
