Package: bioDist 1.79.0

Bioconductor Package Maintainer

bioDist: Different distance measures

A collection of software tools for calculating distance measures.

Authors:B. Ding, R. Gentleman and Vincent Carey

bioDist_1.79.0.tar.gz
bioDist_1.79.0.zip(r-4.5)bioDist_1.79.0.zip(r-4.4)bioDist_1.79.0.zip(r-4.3)
bioDist_1.79.0.tgz(r-4.4-any)bioDist_1.79.0.tgz(r-4.3-any)
bioDist_1.79.0.tar.gz(r-4.5-noble)bioDist_1.79.0.tar.gz(r-4.4-noble)
bioDist_1.79.0.tgz(r-4.4-emscripten)bioDist_1.79.0.tgz(r-4.3-emscripten)
bioDist.pdf |bioDist.html✨
bioDist/json (API)

# Install 'bioDist' in R:
install.packages('bioDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:bioDist-1.79.0(bioc 3.21)bioDist-1.78.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

clusteringclassification

5.86 score 2 packages 61 scripts 568 downloads 15 mentions 10 exports 4 dependencies

Last updated 2 months agofrom:a6341281aa. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 27 2024
R-4.5-winNOTENov 27 2024
R-4.5-linuxNOTENov 27 2024
R-4.4-winNOTENov 27 2024
R-4.4-macNOTENov 27 2024
R-4.3-winNOTENov 27 2024
R-4.3-macNOTENov 27 2024

Exports:closest.topcor.disteucKLD.matrixKLdist.matrixmanMIdistmutualInfospearman.disttau.dist

Dependencies:BiobaseBiocGenericsgenericsKernSmooth

bioDist Introduction

Rendered frombioDist.Rnwusingutils::Sweaveon Nov 27 2024.

Last update: 2013-10-25
Started: 2013-10-25

Readme and manuals

Help Manual

Help pageTopics
Find the closest genes.closest.top
Pearson correlational distancecor.dist cor.dist,eSet-method cor.dist,matrix-method
Euclidean distanceeuc euc,eSet-method euc,matrix-method
Continuous version of Kullback-Leibler Distance (KLD)KLD.matrix KLD.matrix,eSet-method KLD.matrix,list-method KLD.matrix,matrix-method
Discrete version of Kullback-Leibler Distance (KLD)KLdist.matrix KLdist.matrix,eSet-method KLdist.matrix,list-method KLdist.matrix,matrix-method
Manhattan distanceman man,eSet-method man,matrix-method
Mutual InformationMIdist MIdist,ExpressionSet-method MIdist,matrix-method mutualInfo mutualInfo,ExpressionSet-method mutualInfo,matrix-method
Spearman correlational distancespearman.dist spearman.dist,ExpressionSet-method spearman.dist,matrix-method
Kendall's tau correlational distancetau.dist tau.dist,ExpressionSet-method tau.dist,matrix-method