Data | Distance Measures | Session Information
Package: bioDist 1.85.0
Bioconductor Package Maintainer
bioDist: Different distance measures
A collection of software tools for calculating distance measures.
Authors:
bioDist_1.85.0.tar.gz
bioDist_1.85.0.zip(r-4.7)bioDist_1.85.0.zip(r-4.6)bioDist_1.85.0.zip(r-4.5)
bioDist_1.85.0.tgz(r-4.6-any)bioDist_1.85.0.tgz(r-4.5-any)
bioDist_1.85.0.tar.gz(r-4.7-any)bioDist_1.85.0.tar.gz(r-4.6-any)
bioDist_1.85.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
bioDist/json (API)
| # Install 'bioDist' in R: |
| install.packages('bioDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:bioDist-1.85.0(bioc 3.24)bioDist-1.84.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:d6535cd824. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 134 | ||
| linux-devel-x86_64 | NOTE | 130 | ||
| source / vignettes | OK | 154 | ||
| linux-release-x86_64 | NOTE | 126 | ||
| macos-release-arm64 | NOTE | 85 | ||
| macos-oldrel-arm64 | NOTE | 81 | ||
| windows-devel | NOTE | 85 | ||
| windows-release | NOTE | 69 | ||
| windows-oldrel | NOTE | 69 | ||
| wasm-release | OK | 88 |
Exports:closest.topcor.disteucKLD.matrixKLdist.matrixmanMIdistmutualInfospearman.disttau.dist
Dependencies:BiobaseBiocGenericsgenericsKernSmooth
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Find the closest genes. | closest.top |
| Pearson correlational distance | cor.dist cor.dist,eSet-method cor.dist,matrix-method |
| Euclidean distance | euc euc,eSet-method euc,matrix-method |
| Continuous version of Kullback-Leibler Distance (KLD) | KLD.matrix KLD.matrix,eSet-method KLD.matrix,list-method KLD.matrix,matrix-method |
| Discrete version of Kullback-Leibler Distance (KLD) | KLdist.matrix KLdist.matrix,eSet-method KLdist.matrix,list-method KLdist.matrix,matrix-method |
| Manhattan distance | man man,eSet-method man,matrix-method |
| Mutual Information | MIdist MIdist,ExpressionSet-method MIdist,matrix-method mutualInfo mutualInfo,ExpressionSet-method mutualInfo,matrix-method |
| Spearman correlational distance | spearman.dist spearman.dist,ExpressionSet-method spearman.dist,matrix-method |
| Kendall's tau correlational distance | tau.dist tau.dist,ExpressionSet-method tau.dist,matrix-method |
