Package: bettr 1.1.0

Charlotte Soneson

bettr: A Better Way To Explore What Is Best

bettr provides a set of interactive visualization methods to explore the results of a benchmarking study, where typically more than a single performance measures are computed. The user can weight the performance measures according to their preferences. Performance measures can also be grouped and aggregated according to additional annotations.

Authors:Federico Marini [aut], Charlotte Soneson [aut, cre]

bettr_1.1.0.tar.gz
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bettr.pdf |bettr.html✨
bettr/json (API)
NEWS

# Install 'bettr' in R:

install.packages('bettr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/federicomarini/bettr/issues

On BioConductor:bettr-1.1.0(bioc 3.20)bettr-1.0.0(bioc 3.19)

bioconductor-package

7 exports 1.16 score 126 dependencies

Last updated 2 months agofrom:87ddc5ba03

Exports:assembleSE bettr bettrGetReady makeBarPolarPlot makeHeatmap makeParCoordPlot makePolarPlot

Dependencies:abind askpass assertthat backports base64enc Biobase BiocGenerics bslib cachem checkmate circlize cli clue cluster codetools colorspace commonmark ComplexHeatmap cowplot cpp11 crayon crosstalk curl data.table DelayedArray digest doParallel dplyr DT ellipsis evaluate fansi farver fastmap fontawesome foreach foreign Formula fs generics GenomeInfoDb GenomeInfoDbData GenomicRanges GetoptLong ggplot2 GlobalOptions glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets httpuv httr IRanges isoband iterators jquerylib jsonlite knitr labeling later lattice lazyeval learnr lifecycle magrittr markdown MASS Matrix MatrixGenerics matrixStats memoise mgcv mime munsell nlme nnet openssl pillar pkgconfig png promises purrr R6 rappdirs RColorBrewer Rcpp renv rjson rlang rmarkdown rpart rprojroot rstudioapi S4Arrays S4Vectors sass scales shape shiny shinyjqui sortable sourcetools SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex UCSC.utils utf8 vctrs viridis viridisLite withr xfun xtable XVector yaml zlibbioc

bettr

Charlotte Soneson & Federico Marini

Rendered frombettr.Rmdusingknitr::rmarkdownon Jun 16 2024.

Last update: 2024-03-24
Started: 2023-10-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Assemble all bettr input into a SummarizedExperiment object	assembleSE
Launch bettr app to explore and aggregate performance metrics	bettr
Prepare data for plotting with bettr	bettrGetReady
Create a bar/polar plot	makeBarPolarPlot
Create a summary heatmap	makeHeatmap
Create a parallel coordinates plot	makeParCoordPlot
Create a polar plot	makePolarPlot