Package: bamsignals 1.45.1

Loading toy data | Counting reads in given ranges with bamCount() | Basic counting | Accounting for fragment length | Counting on each strand separately | Read profiles for each region with bamProfile() | Regions of the same width | Binning counts | Read coverage with bamCoverage() | Advanced bamsignals filtering options | Exclude ambiguous reads with the mapq argument | Filter reads with the filteredFlag argument | Paired End Data | Paired end data handling with the paired.end argument | Filtering fragments with the tlenFilter argument