Package: antiProfiles 1.53.0
Hector Corrada Bravo
antiProfiles: Implementation of gene expression anti-profiles
Implements gene expression anti-profiles as described in Corrada Bravo et al., BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272.
Authors:
antiProfiles_1.53.0.tar.gz
antiProfiles_1.53.0.zip(r-4.7)antiProfiles_1.53.0.zip(r-4.6)antiProfiles_1.53.0.zip(r-4.5)
antiProfiles_1.53.0.tgz(r-4.6-any)antiProfiles_1.53.0.tgz(r-4.5-any)
antiProfiles_1.53.0.tar.gz(r-4.7-any)antiProfiles_1.53.0.tar.gz(r-4.6-any)
antiProfiles_1.53.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
antiProfiles/json (API)
| # Install 'antiProfiles' in R: |
| install.packages('antiProfiles', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hcbravolab/antiprofiles/issues
On BioConductor:antiProfiles-1.53.0(bioc 3.24)antiProfiles-1.52.0(bioc 3.23)
Last updated from:48f987b6eb. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 137 | ||
| linux-devel-x86_64 | NOTE | 220 | ||
| source / vignettes | OK | 167 | ||
| linux-release-x86_64 | NOTE | 170 | ||
| macos-release-arm64 | NOTE | 74 | ||
| macos-oldrel-arm64 | NOTE | 80 | ||
| windows-devel | NOTE | 99 | ||
| windows-release | NOTE | 94 | ||
| windows-oldrel | NOTE | 98 | ||
| wasm-release | OK | 97 |
Exports:apCountapReorderapStatsbuildAntiProfileevgetNormalRegionsgetNormalTissueRegionsgetProbesetIdsgetProbeStats
Dependencies:latticelocfitmatrixStats
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Expression Anti-profiles | antiProfiles-package |
| A gene expression anti-profile | AntiProfile-class getNormalRegions getNormalRegions,AntiProfile-method getProbesetIds getProbesetIds,AntiProfile-method |
| Statistics used to build anti-profiles | AntiProfileStats-class getProbeStats getProbeStats,AntiProfileStats-method |
| Obtain the anti-profile score for a set of samples | apCount apCount,AntiProfile,matrix-method apCount,TissueSpecAntiProfile,matrix-method |
| Reorder an AntiProfileStats object | apReorder apReorder,AntiProfileStats,numeric-method |
| Compute statistics used to construct antiProfile | apStats |
| Create an anti-profile from a AntiProfileStats object | buildAntiProfile buildAntiProfile,AntiProfileStats-method |
| Compute expression variability measure | ev |
| A gene expression anti-profile using tissue-specific regions | getNormalRegions,TissueSpecAntiProfile-method getNormalTissueRegions getNormalTissueRegions,TissueSpecAntiProfile-method getProbesetIds,TissueSpecAntiProfile-method TissueSpecAntiProfile-class |
