Package: antiProfiles 1.47.0

Hector Corrada Bravo

antiProfiles: Implementation of gene expression anti-profiles

Implements gene expression anti-profiles as described in Corrada Bravo et al., BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272.

Authors:Hector Corrada Bravo, Rafael A. Irizarry and Jeffrey T. Leek

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antiProfiles.pdf |antiProfiles.html✨
antiProfiles/json (API)
NEWS

# Install 'antiProfiles' in R:
install.packages('antiProfiles', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hcbravolab/antiprofiles/issues

On BioConductor:antiProfiles-1.47.0(bioc 3.21)antiProfiles-1.46.0(bioc 3.20)

geneexpressionclassification

3.90 score 354 downloads 1 mentions 9 exports 3 dependencies

Last updated 3 months agofrom:d930a6c9bd. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 29 2024
R-4.5-winNOTEDec 29 2024
R-4.5-linuxNOTEDec 29 2024
R-4.4-winNOTEDec 29 2024
R-4.4-macNOTEDec 29 2024
R-4.3-winNOTEDec 29 2024
R-4.3-macNOTEDec 29 2024

Exports:apCountapReorderapStatsbuildAntiProfileevgetNormalRegionsgetNormalTissueRegionsgetProbesetIdsgetProbeStats

Dependencies:latticelocfitmatrixStats

Introduction to antiProfiles

Rendered fromantiProfiles.Rnwusingutils::Sweaveon Dec 29 2024.

Last update: 2013-03-29
Started: 2013-03-29

Readme and manuals

Help Manual

Help pageTopics
Gene Expression Anti-profilesantiProfiles-package
A gene expression anti-profileAntiProfile-class getNormalRegions getNormalRegions,AntiProfile-method getProbesetIds getProbesetIds,AntiProfile-method
Statistics used to build anti-profilesAntiProfileStats-class getProbeStats getProbeStats,AntiProfileStats-method
Obtain the anti-profile score for a set of samplesapCount apCount,AntiProfile,matrix-method apCount,TissueSpecAntiProfile,matrix-method
Reorder an AntiProfileStats objectapReorder apReorder,AntiProfileStats,numeric-method
Compute statistics used to construct antiProfileapStats
Create an anti-profile from a AntiProfileStats objectbuildAntiProfile buildAntiProfile,AntiProfileStats-method
Compute expression variability measureev
A gene expression anti-profile using tissue-specific regionsgetNormalRegions,TissueSpecAntiProfile-method getNormalTissueRegions getNormalTissueRegions,TissueSpecAntiProfile-method getProbesetIds,TissueSpecAntiProfile-method TissueSpecAntiProfile-class