Package: antiProfiles 1.47.0
Hector Corrada Bravo
antiProfiles: Implementation of gene expression anti-profiles
Implements gene expression anti-profiles as described in Corrada Bravo et al., BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272.
Authors:
antiProfiles_1.47.0.tar.gz
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antiProfiles_1.47.0.tgz(r-4.4-any)antiProfiles_1.47.0.tgz(r-4.3-any)
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antiProfiles.pdf |antiProfiles.html✨
antiProfiles/json (API)
NEWS
| # Install 'antiProfiles' in R: |
| install.packages('antiProfiles', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hcbravolab/antiprofiles/issues
On BioConductor:antiProfiles-1.45.0(bioc 3.20)antiProfiles-1.44.0(bioc 3.19)
Last updated 26 days agofrom:d930a6c9bd. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 30 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | NOTE | Oct 30 2024 |
| R-4.3-mac | NOTE | Oct 30 2024 |
Exports:apCountapReorderapStatsbuildAntiProfileevgetNormalRegionsgetNormalTissueRegionsgetProbesetIdsgetProbeStats
Dependencies:latticelocfitmatrixStats
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Expression Anti-profiles | antiProfiles-package |
| A gene expression anti-profile | AntiProfile-class getNormalRegions getNormalRegions,AntiProfile-method getProbesetIds getProbesetIds,AntiProfile-method |
| Statistics used to build anti-profiles | AntiProfileStats-class getProbeStats getProbeStats,AntiProfileStats-method |
| Obtain the anti-profile score for a set of samples | apCount apCount,AntiProfile,matrix-method apCount,TissueSpecAntiProfile,matrix-method |
| Reorder an AntiProfileStats object | apReorder apReorder,AntiProfileStats,numeric-method |
| Compute statistics used to construct antiProfile | apStats |
| Create an anti-profile from a AntiProfileStats object | buildAntiProfile buildAntiProfile,AntiProfileStats-method |
| Compute expression variability measure | ev |
| A gene expression anti-profile using tissue-specific regions | getNormalRegions,TissueSpecAntiProfile-method getNormalTissueRegions getNormalTissueRegions,TissueSpecAntiProfile-method getProbesetIds,TissueSpecAntiProfile-method TissueSpecAntiProfile-class |
