Package: antiProfiles 1.53.0

Hector Corrada Bravo

antiProfiles: Implementation of gene expression anti-profiles

Implements gene expression anti-profiles as described in Corrada Bravo et al., BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272.

Authors:Hector Corrada Bravo, Rafael A. Irizarry and Jeffrey T. Leek

antiProfiles_1.53.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
antiProfiles/json (API)
NEWS

# Install 'antiProfiles' in R:
install.packages('antiProfiles', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hcbravolab/antiprofiles/issues

On BioConductor:antiProfiles-1.53.0(bioc 3.24)antiProfiles-1.52.0(bioc 3.23)

geneexpressionclassification

3.90 score 4 scripts 488 downloads 1 mentions 9 exports 3 dependencies

Last updated from:48f987b6eb. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR140
linux-devel-x86_64NOTE186
source / vignettesOK184
linux-release-x86_64NOTE132
macos-release-arm64NOTE74
macos-oldrel-arm64NOTE112
windows-develNOTE102
windows-releaseNOTE139
windows-oldrelNOTE85
wasm-releaseOK105

Exports:apCountapReorderapStatsbuildAntiProfileevgetNormalRegionsgetNormalTissueRegionsgetProbesetIdsgetProbeStats

Dependencies:latticelocfitmatrixStats

Introduction to antiProfiles

Rendered fromantiProfiles.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2013-03-29
Started: 2013-03-29

Readme and manuals

Help Manual

Help pageTopics
Gene Expression Anti-profilesantiProfiles-package
A gene expression anti-profileAntiProfile-class getNormalRegions getNormalRegions,AntiProfile-method getProbesetIds getProbesetIds,AntiProfile-method
Statistics used to build anti-profilesAntiProfileStats-class getProbeStats getProbeStats,AntiProfileStats-method
Obtain the anti-profile score for a set of samplesapCount apCount,AntiProfile,matrix-method apCount,TissueSpecAntiProfile,matrix-method
Reorder an AntiProfileStats objectapReorder apReorder,AntiProfileStats,numeric-method
Compute statistics used to construct antiProfileapStats
Create an anti-profile from a AntiProfileStats objectbuildAntiProfile buildAntiProfile,AntiProfileStats-method
Compute expression variability measureev
A gene expression anti-profile using tissue-specific regionsgetNormalRegions,TissueSpecAntiProfile-method getNormalTissueRegions getNormalTissueRegions,TissueSpecAntiProfile-method getProbesetIds,TissueSpecAntiProfile-method TissueSpecAntiProfile-class