{ "_id": "6a196c37acfb0bcc41dea5da", "Package": "antiProfiles", "Maintainer": "Hector Corrada Bravo ", "Author": "Hector Corrada Bravo, Rafael A. Irizarry and Jeffrey T. Leek", "Version": "1.53.0", "License": "Artistic-2.0", "Title": "Implementation of gene expression anti-profiles", "Description": "Implements gene expression anti-profiles as described in\nCorrada Bravo et al., BMC Bioinformatics 2012, 13:272\ndoi:10.1186/1471-2105-13-272.", "URL": "https://github.com/HCBravoLab/antiProfiles", "biocViews": "GeneExpression,Classification", "Collate": "'AllClasses.r' 'AllGenerics.r' 'show-methods.r'\n'antiProfiles-package.r' 'ap-methods.r' 'apCounts-methods.r'\n'apReorder-methods.r' 'apStats.r' 'accessors.r' 'ev.R'", "RoxygenNote": "5.0.1", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:37:37 UTC", "RemoteUrl": "https://github.com/bioc/antiProfiles", "RemoteRef": "HEAD", "RemoteSha": "48f987b6eb740546c4c6494a7066b0d461e191ed", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 08:41:27 UTC", "User": "root" }, "MD5sum": "2802369774d12bcefe1131ff2a2a84db", "_user": "bioc", "_type": "src", "_file": "antiProfiles_1.53.0.tar.gz", "_fileid": "a3d33b7943de58e5ca047c1b579bab76bcc44dd27e98b362c673078589e94a2c", "_filesize": 214656, "_sha256": "a3d33b7943de58e5ca047c1b579bab76bcc44dd27e98b362c673078589e94a2c", "_created": "2026-05-29T08:41:27.000Z", "_published": "2026-05-29T10:36:39.963Z", "_jobs": [ { "job": 78467485924, "time": 140, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7286700357" }, { "job": 78467485917, "time": 186, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7286714404" }, { "job": 78467485936, "time": 132, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7286698332" }, { "job": 78467485946, "time": 112, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7288712368" }, { "job": 78467485957, "time": 74, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7288695307" }, { "job": 78467031365, "time": 184, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7286656828" }, { "job": 78467485887, "time": 105, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7286689744" }, { "job": 78467486018, "time": 102, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7286689198" }, { "job": 78467485940, "time": 85, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7286684032" }, { "job": 78467485992, "time": 139, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7286700037" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 10 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/antiProfiles", "_commit": { "id": "48f987b6eb740546c4c6494a7066b0d461e191ed", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379857 }, "_maintainer": { "name": "Hector Corrada Bravo", "email": "hcorrada@gmail.com", "login": "hcorrada", "description": "", "uuid": 2072476 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0", "role": "Depends" }, { "package": "matrixStats", "version": ">= 0.50.0", "role": "Depends" }, { "package": "methods", "version": ">= 2.14", "role": "Depends" }, { "package": "locfit", "version": ">= 1.5", "role": "Depends" }, { "package": "antiProfilesData", "role": "Suggests" }, { "package": "RColorBrewer", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.53.0", "bioc": "3.24" }, { "branch": "release", "version": "1.52.0", "bioc": "3.23" } ], "_topics": [ "geneexpression", "classification" ], "_stars": 0, "_contributors": [ { "user": "dtenenba", "count": 14, "uuid": 2286826 }, { "user": "hcorrada", "count": 4, "uuid": 2072476 }, { "user": "nturaga", "count": 4, "uuid": 2746443 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 488, "source": "https://www.bioconductor.org/packages/stats/bioc/antiProfiles" }, "_mentions": 1, "_devurl": "https://github.com/hcbravolab/antiprofiles", "_searchresults": 4, "_rbuild": "4.6.0", "_assets": [ "extra/antiProfiles.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/hcbravolab/antiprofiles", "_realowner": "bioc", "_cranurl": false, "_exports": [ "apCount", "apReorder", "apStats", "buildAntiProfile", "ev", "getNormalRegions", "getNormalTissueRegions", "getProbesetIds", "getProbeStats" ], "_help": [ { "page": "antiProfiles-package", "title": "Gene Expression Anti-profiles", "topics": [ "antiProfiles-package" ] }, { "page": "antiprofile-class", "title": "A gene expression anti-profile", "topics": [ "AntiProfile-class", "getNormalRegions", "getNormalRegions,AntiProfile-method", "getProbesetIds", "getProbesetIds,AntiProfile-method" ] }, { "page": "antiprofilestats-class", "title": "Statistics used to build anti-profiles", "topics": [ "AntiProfileStats-class", "getProbeStats", "getProbeStats,AntiProfileStats-method" ] }, { "page": "apCount-methods", "title": "Obtain the anti-profile score for a set of samples", "topics": [ "apCount", "apCount,AntiProfile,matrix-method", "apCount,TissueSpecAntiProfile,matrix-method" ] }, { "page": "apReorder-methods", "title": "Reorder an AntiProfileStats object", "topics": [ "apReorder", "apReorder,AntiProfileStats,numeric-method" ] }, { "page": "apStats", "title": "Compute statistics used to construct antiProfile", "topics": [ "apStats" ] }, { "page": "buildAntiProfile-methods", "title": "Create an anti-profile from a AntiProfileStats object", "topics": [ "buildAntiProfile", "buildAntiProfile,AntiProfileStats-method" ] }, { "page": "ev", "title": "Compute expression variability measure", "topics": [ "ev" ] }, { "page": "tissueSpecAntiprofile-class", "title": "A gene expression anti-profile using tissue-specific regions", "topics": [ "getNormalRegions,TissueSpecAntiProfile-method", "getNormalTissueRegions", "getNormalTissueRegions,TissueSpecAntiProfile-method", "getProbesetIds,TissueSpecAntiProfile-method", "TissueSpecAntiProfile-class" ] } ], "_rundeps": [ "lattice", "locfit", "matrixStats" ], "_vignettes": [ { "source": "antiProfiles.Rnw", "filename": "antiProfiles.pdf", "title": "Introduction to antiProfiles", "engine": "utils::Sweave", "headings": [], "created": "2013-03-29 21:14:40", "modified": "2013-03-29 21:14:40", "commits": 1 } ], "_score": 3.9030899869919438, "_indexed": true, "_nocasepkg": "antiprofiles", "_universes": [ "bioc", "hcorrada", "hcbravolab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.53.0", "date": "2026-05-29T08:44:42.000Z", "distro": "noble", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "c7d9f5911ea08f29a94864bcc5e04b5e1358d3be4c783b96d68af65bbf4313e5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514" }, { "r": "4.6.0", "os": "linux", "version": "1.53.0", "date": "2026-05-29T08:43:45.000Z", "distro": "noble", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "377481a1335ddc1385db86d9abf5b59a9568d5db724116105a0db8fff9e7b7e6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514" }, { "r": "4.5.3", "os": "mac", "version": "1.53.0", "date": "2026-05-29T10:36:12.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "b510a565ac9510aea78931876e5f5875600a1fb915b87e9601d9174d8411d62b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514" }, { "r": "4.6.0", "os": "mac", "version": "1.53.0", "date": "2026-05-29T10:35:16.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "2d90986e023e2fa90dcff6e297394d453e1028780490ce1f9757e6bcbf0e0a19", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514" }, { "r": "4.6.0", "os": "wasm", "version": "1.53.0", "date": "2026-05-29T08:43:31.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "cc95b7f3c14dd986c3ec8068d694e60ee49f2106fca7d025ffb2b54c2291c31d", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514" }, { "r": "4.7.0", "os": "win", "version": "1.53.0", "date": "2026-05-29T08:43:13.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "c8fa480b277370cef4b55bd8d8d24cf41ba0482f840308238d3a28c424182912", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514" }, { "r": "4.5.3", "os": "win", "version": "1.53.0", "date": "2026-05-29T08:42:55.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "ad4a243dfdbdb10f59737ecad934a0436f8aaa0b2f19dda14fb9e22723ffa45a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514" }, { "r": "4.6.0", "os": "win", "version": "1.53.0", "date": "2026-05-29T08:43:45.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "822181eb9feb5fda641f17fbd00636db722f762a9fc7f4fa5d30037bdf035951", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26627274514" } ] }