{ "_id": "6a4f3a8b21b18e15484ff5f4", "Package": "antiProfiles", "Maintainer": "Hector Corrada Bravo ", "Author": "Hector Corrada Bravo, Rafael A. Irizarry and Jeffrey T. Leek", "Version": "1.53.0", "License": "Artistic-2.0", "Title": "Implementation of gene expression anti-profiles", "Description": "Implements gene expression anti-profiles as described in\nCorrada Bravo et al., BMC Bioinformatics 2012, 13:272\ndoi:10.1186/1471-2105-13-272.", "URL": "https://github.com/HCBravoLab/antiProfiles", "biocViews": "GeneExpression,Classification", "Collate": "'AllClasses.r' 'AllGenerics.r' 'show-methods.r'\n'antiProfiles-package.r' 'ap-methods.r' 'apCounts-methods.r'\n'apReorder-methods.r' 'apStats.r' 'accessors.r' 'ev.R'", "RoxygenNote": "5.0.1", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:37:37 UTC", "RemoteUrl": "https://github.com/bioc/antiProfiles", "RemoteRef": "HEAD", "RemoteSha": "48f987b6eb740546c4c6494a7066b0d461e191ed", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-09 06:01:15 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "antiProfiles_1.53.0.tar.gz", "_fileid": "https://r2.ropensci.org/6dfcc54ea511482487a11df423c4138429b15e309abcd71345bce16eaf9eef78", "_filesize": 217002, "_sha256": "6dfcc54ea511482487a11df423c4138429b15e309abcd71345bce16eaf9eef78", "_expires": "2026-10-17T06:07:04.000Z", "_created": "2026-07-09T06:01:15.000Z", "_published": "2026-07-09T06:07:07.620Z", "_bioccheck": { "error": 1, "warning": 3, "note": 9 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231", "_status": "success", "_upstream": "https://github.com/bioc/antiProfiles", "_commit": { "id": "48f987b6eb740546c4c6494a7066b0d461e191ed", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379857 }, "_maintainer": { "name": "Hector Corrada Bravo", "email": "hcorrada@gmail.com", "login": "hcorrada", "description": "", "uuid": 2072476 }, "_distro": "resolute", "_jobs": [ { "job": 86050524111, "time": 137, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8190354079" }, { "job": 86050524151, "time": 220, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8190374954" }, { "job": 86050524126, "time": 170, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8190362644" }, { "job": 86050524123, "time": 80, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8190340220" }, { "job": 86050524122, "time": 74, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8190338596" }, { "job": 86050139609, "time": 167, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8190305020" }, { "job": 86050524132, "time": 97, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8190344248" }, { "job": 86050524121, "time": 99, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8190344545" }, { "job": 86050524183, "time": 98, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8190344987" }, { "job": 86050524150, "time": 94, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8190343671" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0", "role": "Depends" }, { "package": "matrixStats", "version": ">= 0.50.0", "role": "Depends" }, { "package": "methods", "version": ">= 2.14", "role": "Depends" }, { "package": "locfit", "version": ">= 1.5", "role": "Depends" }, { "package": "antiProfilesData", "role": "Suggests" }, { "package": "RColorBrewer", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.53.0", "bioc": "3.24" }, { "branch": "release", "version": "1.52.0", "bioc": "3.23" } ], "_topics": [ "geneexpression", "classification" ], "_stars": 0, "_contributors": [ { "user": "dtenenba", "count": 14, "uuid": 2286826 }, { "user": "hcorrada", "count": 4, "uuid": 2072476 }, { "user": "nturaga", "count": 4, "uuid": 2746443 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 488, "source": "https://www.bioconductor.org/packages/stats/bioc/antiProfiles" }, "_mentions": 1, "_devurl": "https://github.com/hcbravolab/antiprofiles", "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/antiProfiles.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/hcbravolab/antiprofiles", "_realowner": "bioc", "_cranurl": false, "_exports": [ "apCount", "apReorder", "apStats", "buildAntiProfile", "ev", "getNormalRegions", "getNormalTissueRegions", "getProbesetIds", "getProbeStats" ], "_help": [ { "page": "antiProfiles-package", "title": "Gene Expression Anti-profiles", "topics": [ "antiProfiles-package" ] }, { "page": "antiprofile-class", "title": "A gene expression anti-profile", "topics": [ "AntiProfile-class", "getNormalRegions", "getNormalRegions,AntiProfile-method", "getProbesetIds", "getProbesetIds,AntiProfile-method" ] }, { "page": "antiprofilestats-class", "title": "Statistics used to build anti-profiles", "topics": [ "AntiProfileStats-class", "getProbeStats", "getProbeStats,AntiProfileStats-method" ] }, { "page": "apCount-methods", "title": "Obtain the anti-profile score for a set of samples", "topics": [ "apCount", "apCount,AntiProfile,matrix-method", "apCount,TissueSpecAntiProfile,matrix-method" ] }, { "page": "apReorder-methods", "title": "Reorder an AntiProfileStats object", "topics": [ "apReorder", "apReorder,AntiProfileStats,numeric-method" ] }, { "page": "apStats", "title": "Compute statistics used to construct antiProfile", "topics": [ "apStats" ] }, { "page": "buildAntiProfile-methods", "title": "Create an anti-profile from a AntiProfileStats object", "topics": [ "buildAntiProfile", "buildAntiProfile,AntiProfileStats-method" ] }, { "page": "ev", "title": "Compute expression variability measure", "topics": [ "ev" ] }, { "page": "tissueSpecAntiprofile-class", "title": "A gene expression anti-profile using tissue-specific regions", "topics": [ "getNormalRegions,TissueSpecAntiProfile-method", "getNormalTissueRegions", "getNormalTissueRegions,TissueSpecAntiProfile-method", "getProbesetIds,TissueSpecAntiProfile-method", "TissueSpecAntiProfile-class" ] } ], "_rundeps": [ "lattice", "locfit", "matrixStats" ], "_vignettes": [ { "source": "antiProfiles.Rnw", "filename": "antiProfiles.pdf", "title": "Introduction to antiProfiles", "engine": "utils::Sweave", "headings": [], "created": "2013-03-29 21:14:40", "modified": "2013-03-29 21:14:40", "commits": 1 } ], "_score": 3.9030899869919438, "_indexed": true, "_nocasepkg": "antiprofiles", "_universes": [ "bioc", "hcorrada", "hcbravolab" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.53.0", "date": "2026-07-09T06:05:55.000Z", "distro": "resolute", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "https://r2.ropensci.org/ae5c935905a3749bb4acb0614c17bac1c928d8daf2780742bf981b8cbd219165", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231" }, { "r": "4.6.1", "os": "linux", "version": "1.53.0", "date": "2026-07-09T06:05:06.000Z", "distro": "resolute", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "https://r2.ropensci.org/5a1d64bcb4ce710aee1796773ddedcbc3b37afde1dabe761672e69aaa5145ed9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231" }, { "r": "4.5.3", "os": "mac", "version": "1.53.0", "date": "2026-07-09T06:03:38.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "https://r2.ropensci.org/4135061c01ed00104f8009007000fe5be25e44816ec8767221b4eb640599b882", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231" }, { "r": "4.6.1", "os": "mac", "version": "1.53.0", "date": "2026-07-09T06:03:33.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "https://r2.ropensci.org/62d46c9b15c34a14bd8ee0882c0d8c02fb0b7e8ee8a9cabf3b1da808cff1eb78", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231" }, { "r": "4.6.0", "os": "wasm", "version": "1.53.0", "date": "2026-07-09T06:04:04.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "https://r2.ropensci.org/468a1e3c2a285178e39fde0030f90d9941e12e29155e003cb8bdaae40ec50ca6", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231" }, { "r": "4.7.0", "os": "win", "version": "1.53.0", "date": "2026-07-09T06:03:48.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "https://r2.ropensci.org/810aabc1c7b257d1b90b77def845a4aef2c507249029536742a6c9761f3e3f4b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231" }, { "r": "4.5.3", "os": "win", "version": "1.53.0", "date": "2026-07-09T06:03:52.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "https://r2.ropensci.org/f1ddbbb25bafcdfabf004f489ada76636e60317e0de64c4ac68a11a50ecc0f54", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231" }, { "r": "4.6.1", "os": "win", "version": "1.53.0", "date": "2026-07-09T06:03:46.000Z", "commit": "48f987b6eb740546c4c6494a7066b0d461e191ed", "fileid": "https://r2.ropensci.org/f448013cf12a89c1feee302e5156ce1f96a9f66bf0845fbd18d9e424a711f5bd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28997447231" } ] }