Package: anota 1.61.0

Ola Larsson

anota: ANalysis Of Translational Activity (ANOTA).

Genome wide studies of translational control is emerging as a tool to study verious biological conditions. The output from such analysis is both the mRNA level (e.g. cytosolic mRNA level) and the levl of mRNA actively involved in translation (the actively translating mRNA level) for each mRNA. The standard analysis of such data strives towards identifying differential translational between two or more sample classes - i.e. differences in actively translated mRNA levels that are independent of underlying differences in cytosolic mRNA levels. This package allows for such analysis using partial variances and the random variance model. As 10s of thousands of mRNAs are analyzed in parallell the library performs a number of tests to assure that the data set is suitable for such analysis.

Authors:Ola Larsson <[email protected]>, Nahum Sonenberg <[email protected]>, Robert Nadon <[email protected]>

anota_1.61.0.tar.gz
anota_1.61.0.zip(r-4.7)anota_1.61.0.zip(r-4.6)anota_1.61.0.zip(r-4.5)
anota_1.61.0.tgz(r-4.6-any)anota_1.61.0.tgz(r-4.5-any)
anota_1.61.0.tar.gz(r-4.7-any)anota_1.61.0.tar.gz(r-4.6-any)
anota_1.61.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
anota/json (API)
NEWS

# Install 'anota' in R:
install.packages('anota', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:anota-1.61.0(bioc 3.24)anota-1.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressiondifferentialexpressionmicroarraysequencing

4.38 score 1 packages 2 scripts 526 downloads 4 mentions 4 exports 32 dependencies

Last updated from:e906dc11d3. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR139
linux-devel-x86_64NOTE206
source / vignettesOK205
linux-release-x86_64NOTE167
macos-release-arm64NOTE89
macos-oldrel-arm64NOTE109
windows-develNOTE115
windows-releaseNOTE107
windows-oldrelNOTE114
wasm-releaseOK98

Exports:anotaGetSigGenesanotaPerformQcanotaPlotSigGenesanotaResidOutlierTest

Dependencies:BiobaseBiocGenericsclicpp11farvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmulttestplyrqvalueR6RColorBrewerRcppreshape2rlangS7scalesstringistringrsurvivalvctrsviridisLitewithr

ANalysis Of Translational Activity (anota)

Rendered fromanota.Rnwusingutils::Sweaveon May 25 2026.

Last update: 2013-11-01
Started: 2013-11-01