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  "Version": "1.61.0",
  "Date": "2011-03-03",
  "Title": "ANalysis Of Translational Activity (ANOTA).",
  "Author": "Ola Larsson <ola.larsson@ki.se>, Nahum Sonenberg\n<nahum.sonenberg@mcgill.ca>, Robert Nadon\n<robert.nadon@mcgill.ca>",
  "Maintainer": "Ola Larsson <ola.larsson@ki.se>",
  "Description": "Genome wide studies of translational control is emerging\nas a tool to study verious biological conditions. The output\nfrom such analysis is both the mRNA level (e.g. cytosolic mRNA\nlevel) and the levl of mRNA actively involved in translation\n(the actively translating mRNA level) for each mRNA. The\nstandard analysis of such data strives towards identifying\ndifferential translational between two or more sample classes -\ni.e. differences in actively translated mRNA levels that are\nindependent of underlying differences in cytosolic mRNA levels.\nThis package allows for such analysis using partial variances\nand the random variance model. As 10s of thousands of mRNAs are\nanalyzed in parallell the library performs a number of tests to\nassure that the data set is suitable for such analysis.",
  "LazyData": "yes",
  "LazyLoad": "yes",
  "License": "GPL-3",
  "biocViews": "GeneExpression, DifferentialExpression, Microarray,\nSequencing",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:25 UTC",
  "RemoteUrl": "https://github.com/bioc/anota",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
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    "User": "root"
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    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
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    "email": "ola.larsson@ki.se",
    "login": "olalar77",
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    "sequencing"
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    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "extra/contents.json",
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  "_realowner": "bioc",
  "_cranurl": false,
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    "anotaPerformQc",
    "anotaPlotSigGenes",
    "anotaResidOutlierTest"
  ],
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      "name": "anotaDataP",
      "title": "Sample data set for anota",
      "object": "anotaDataSet",
      "class": [
        "matrix",
        "array"
      ],
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        "GSM346116_fp_noaa2_quant.txt_mod",
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        "dataPrichNew"
      ],
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      "table": true,
      "tojson": true
    },
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      "title": "Sample data set for anota",
      "object": "anotaDataSet",
      "class": [
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        "array"
      ],
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      "table": true,
      "tojson": true
    },
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      "object": "anotaDataSet",
      "class": [
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      ],
      "fields": [],
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      "tojson": true
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    {
      "page": "anotaDataSet",
      "title": "Sample data set for anota",
      "topics": [
        "anotaDataP",
        "anotaDataSet",
        "anotaDataT",
        "anotaPhenoVec"
      ]
    },
    {
      "page": "anotaGetSigGenes",
      "title": "Identify genes that are under translational control independent of cytosolic mRNA levels",
      "topics": [
        "anotaGetSigGenes"
      ]
    },
    {
      "page": "anotaPerformQc",
      "title": "Perform quality control to ensure that the supplied data set is suitable for Analysis of Partial Variance (APV) within anota.",
      "topics": [
        "anotaPerformQc"
      ]
    },
    {
      "page": "anotaPlotSigGenes",
      "title": "Filter and plot genes to visualize/summarize genes that are differentially translated.",
      "topics": [
        "anotaPlotSigGenes"
      ]
    },
    {
      "page": "anotaResidOutlierTest",
      "title": "Test for normality of residuals",
      "topics": [
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      ]
    }
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