Package: alabaster.spatial 1.7.1
Aaron Lun
alabaster.spatial: Save and Load Spatial 'Omics Data to/from File
Save SpatialExperiment objects and their images into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Authors:
alabaster.spatial_1.7.1.tar.gz
alabaster.spatial_1.7.1.zip(r-4.5)alabaster.spatial_1.7.1.zip(r-4.4)alabaster.spatial_1.7.1.zip(r-4.3)
alabaster.spatial_1.7.1.tgz(r-4.4-any)alabaster.spatial_1.7.1.tgz(r-4.3-any)
alabaster.spatial_1.7.1.tar.gz(r-4.5-noble)alabaster.spatial_1.7.1.tar.gz(r-4.4-noble)
alabaster.spatial_1.7.1.tgz(r-4.4-emscripten)alabaster.spatial_1.7.1.tgz(r-4.3-emscripten)
alabaster.spatial.pdf |alabaster.spatial.html✨
alabaster.spatial/json (API)
NEWS
| # Install 'alabaster.spatial' in R: |
| install.packages('alabaster.spatial', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:alabaster.spatial-1.7.1(bioc 3.21)alabaster.spatial-1.6.1(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:f82c877673. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 10 2024 |
| R-4.5-win | NOTE | Dec 10 2024 |
| R-4.5-linux | NOTE | Dec 10 2024 |
| R-4.4-win | OK | Dec 10 2024 |
| R-4.4-mac | OK | Dec 10 2024 |
| R-4.3-win | OK | Dec 10 2024 |
| R-4.3-mac | OK | Dec 10 2024 |
Exports:loadSpatialExperimentloadSpatialImagereadSpatialExperimentsaveObjectstageObject
Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.scealabaster.schemasalabaster.seaskpassassortheadBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueHDF5ArrayhttrIRangesjsonlitejsonvalidatelatticelifecyclemagickmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpurrrR6Rcpprhdf5rhdf5filtersRhdf5librjsonrlangRSQLiteS4ArraysS4VectorsSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8V8vctrswithrXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Load a spatial image | loadSpatialImage |
| Read a SpatialExperiment from disk | loadSpatialExperiment readSpatialExperiment |
| Save a spatial experiment | saveObject,SpatialExperiment-method stageObject,SpatialExperiment-method |
| Stage images for upload | stageObject,RemoteSpatialImage-method stageObject,StoredSpatialImage-method stageObject,VirtualSpatialImage-method stageSpatialImage |
