Package: alabaster.spatial 1.5.1

Aaron Lun

alabaster.spatial: Save and Load Spatial 'Omics Data to/from File

Save SpatialExperiment objects and their images into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Authors:Aaron Lun [aut, cre]

alabaster.spatial_1.5.1.tar.gz
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alabaster.spatial.pdf |alabaster.spatial.html✨
alabaster.spatial/json (API)
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On BioConductor:alabaster.spatial-1.5.1(bioc 3.20)alabaster.spatial-1.4.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

5 exports 1.08 score 77 dependencies 1 dependents

Last updated 2 months agofrom:07a1ee86ac

Exports:loadSpatialExperimentloadSpatialImagereadSpatialExperimentsaveObjectstageObject

Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.scealabaster.schemasalabaster.seaskpassBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglueHDF5ArrayhttrIRangesjsonlitejsonvalidatelatticelifecyclemagickmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpurrrR6Rcpprhdf5rhdf5filtersRhdf5librjsonrlangRSQLiteS4ArraysS4VectorsSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8V8vctrswithrXVectorzlibbioc