{
  "_id": "6a1ae8f51d7bb097a09f25a1",
  "Package": "alabaster.spatial",
  "Title": "Save and Load Spatial 'Omics Data to/from File",
  "Description": "Save SpatialExperiment objects and their images into file\nartifacts, and load them back into memory. This is a more\nportable alternative to serialization of such objects into RDS\nfiles. Each artifact is associated with metadata for further\ninterpretation; downstream applications can enrich this\nmetadata with context-specific properties.",
  "Version": "1.13.0",
  "Date": "2026-02-01",
  "License": "MIT + file LICENSE",
  "Authors@R": "person(\"Aaron\", \"Lun\", role=c(\"aut\", \"cre\"), email=\"infinite.monkeys.with.keyboards@gmail.com\")",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.3",
  "biocViews": "DataImport, DataRepresentation",
  "Config/pak/sysreqs": "libmagick++-dev gsfonts libicu-dev libssl-dev\nlibnode-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:00:07 UTC",
  "RemoteUrl": "https://github.com/bioc/alabaster.spatial",
  "RemoteRef": "HEAD",
  "RemoteSha": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 09:37:39 UTC",
    "User": "root"
  },
  "Author": "Aaron Lun [aut, cre]",
  "Maintainer": "Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>",
  "MD5sum": "1a2ae5253b3831bb6d17b34cdbf3b8cb",
  "_user": "bioc",
  "_type": "src",
  "_file": "alabaster.spatial_1.13.0.tar.gz",
  "_fileid": "0bf2665f5c261bc757debb3d482196c0524d4cad1515c208948d570fa7c5febc",
  "_filesize": 540687,
  "_sha256": "0bf2665f5c261bc757debb3d482196c0524d4cad1515c208948d570fa7c5febc",
  "_created": "2026-05-30T09:37:39.000Z",
  "_published": "2026-05-30T13:41:09.720Z",
  "_jobs": [
    {
      "job": 78640145892,
      "time": 200,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7307344574"
    },
    {
      "job": 78640145898,
      "time": 356,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7307359486"
    },
    {
      "job": 78640145899,
      "time": 358,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7307359799"
    },
    {
      "job": 78640145894,
      "time": 226,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7308588917"
    },
    {
      "job": 78640145895,
      "time": 236,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7308588162"
    },
    {
      "job": 78639495220,
      "time": 290,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307234267"
    },
    {
      "job": 78640145891,
      "time": 156,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307340420"
    },
    {
      "job": 78640145913,
      "time": 259,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7307351012"
    },
    {
      "job": 78640145907,
      "time": 279,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7307353009"
    },
    {
      "job": 78640145910,
      "time": 255,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7307350709"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 8
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/alabaster.spatial",
  "_commit": {
    "id": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381207
  },
  "_maintainer": {
    "name": "Aaron Lun",
    "email": "infinite.monkeys.with.keyboards@gmail.com",
    "login": "ltla",
    "twitter": "@realAaronLun",
    "description": "(ノಠ益ಠ)ノ彡┻━┻\n",
    "uuid": 8166669
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "SpatialExperiment",
      "role": "Depends"
    },
    {
      "package": "alabaster.base",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "alabaster.sce",
      "role": "Imports"
    },
    {
      "package": "rhdf5",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "DropletUtils",
      "role": "Suggests"
    },
    {
      "package": "magick",
      "role": "Suggests"
    },
    {
      "package": "png",
      "role": "Suggests"
    },
    {
      "package": "digest",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-05",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.13.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.12.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "dataimport",
    "datarepresentation"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 299,
    "source": "https://www.bioconductor.org/packages/stats/bioc/alabaster.spatial"
  },
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/alabaster.spatial.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "loadSpatialExperiment",
    "loadSpatialImage",
    "readSpatialExperiment",
    "saveObject",
    "stageObject"
  ],
  "_help": [
    {
      "page": "loadSpatialImage",
      "title": "Load a spatial image",
      "topics": [
        "loadSpatialImage"
      ]
    },
    {
      "page": "readSpatialExperiment",
      "title": "Read a SpatialExperiment from disk",
      "topics": [
        "loadSpatialExperiment",
        "readSpatialExperiment"
      ]
    },
    {
      "page": "saveSpatialExperiment",
      "title": "Save a spatial experiment",
      "topics": [
        "saveObject,SpatialExperiment-method",
        "stageObject,SpatialExperiment-method"
      ]
    },
    {
      "page": "stageSpatialImage",
      "title": "Stage images for upload",
      "topics": [
        "stageObject,RemoteSpatialImage-method",
        "stageObject,StoredSpatialImage-method",
        "stageObject,VirtualSpatialImage-method",
        "stageSpatialImage"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/alabaster.spatial/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "alabaster.base",
    "alabaster.matrix",
    "alabaster.ranges",
    "alabaster.sce",
    "alabaster.schemas",
    "alabaster.se",
    "askpass",
    "assorthead",
    "Biobase",
    "BiocFileCache",
    "BiocGenerics",
    "biocmake",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "curl",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "dir.expiry",
    "dplyr",
    "fastmap",
    "filelock",
    "generics",
    "GenomicRanges",
    "glue",
    "h5mread",
    "HDF5Array",
    "httr2",
    "IRanges",
    "jsonlite",
    "jsonvalidate",
    "lattice",
    "lifecycle",
    "magick",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "rhdf5",
    "rhdf5filters",
    "Rhdf5lib",
    "rjson",
    "rlang",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "SingleCellExperiment",
    "SparseArray",
    "SpatialExperiment",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "V8",
    "vctrs",
    "withr",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "userguide.Rmd",
      "filename": "userguide.html",
      "title": "Save/load spatial omics data to/from file",
      "author": "Aaron Lun",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Quick start",
        "Session info"
      ],
      "created": "2022-09-21 21:43:05",
      "modified": "2024-10-16 18:05:46",
      "commits": 3
    }
  ],
  "_score": 4.954242509439325,
  "_indexed": true,
  "_nocasepkg": "alabaster.spatial",
  "_universes": [
    "bioc",
    "ltla"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.13.0",
      "date": "2026-05-30T09:56:27.000Z",
      "distro": "noble",
      "commit": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
      "fileid": "29c8b8cd8f142d8fe0d952252e0a7e51330469ae9cf81f8875f94b3549b59aa7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.13.0",
      "date": "2026-05-30T09:56:21.000Z",
      "distro": "noble",
      "commit": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
      "fileid": "8e1af02c6c545bedf334a0d01080ff0a8c940deaf36c3a68228cbf0bab3e29a3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.13.0",
      "date": "2026-05-30T13:38:38.000Z",
      "commit": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
      "fileid": "58e890f9d12b4dda4cdc2a59d7b5908b512b591834b630a344deaec68ee82ee6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.13.0",
      "date": "2026-05-30T13:38:28.000Z",
      "commit": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
      "fileid": "7f0cbd63e7feecaf36a63c59c69154cf3e53aca2626deb65720f075adf7bc3d1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.13.0",
      "date": "2026-05-30T09:56:00.000Z",
      "commit": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
      "fileid": "5fd265dfc1402f7fd82daf43db16d3a27d366b7b5a245dffae11f4051489a05f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.13.0",
      "date": "2026-05-30T09:54:47.000Z",
      "commit": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
      "fileid": "7b2abaed1e876bd1d2d5fb72044e5d5721b9c700e45fcdb4390ede5fbfdf73bf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.13.0",
      "date": "2026-05-30T09:55:18.000Z",
      "commit": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
      "fileid": "263cded9665d19fa6b552b136486f62acef28f59e21336ab9fa43e74015f7b3b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.13.0",
      "date": "2026-05-30T09:54:51.000Z",
      "commit": "3c905d3985697f4ef20d82bfe20c281665e0b4fd",
      "fileid": "efe704b4e2b9e9affb0fd09535b9e5804b8e0a85c7dc150bb759de14904b8847",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676059063"
    }
  ]
}