Package: affyILM 1.65.0

Myriam Kroll and Fabrice Berger

affyILM: Linear Model of background subtraction and the Langmuir isotherm

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Authors:K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

affyILM_1.65.0.tar.gz
affyILM_1.65.0.zip(r-4.7)affyILM_1.65.0.zip(r-4.6)affyILM_1.65.0.zip(r-4.5)
affyILM_1.65.0.tgz(r-4.6-any)affyILM_1.65.0.tgz(r-4.5-any)
affyILM_1.65.0.tar.gz(r-4.7-any)affyILM_1.65.0.tar.gz(r-4.6-any)
affyILM_1.65.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
affyILM/json (API)

# Install 'affyILM' in R:

install.packages('affyILM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:affyILM-1.65.0(bioc 3.24)affyILM-1.64.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray onechannel preprocessing

3.60 score 2 scripts 2 mentions 7 exports 15 dependencies

Last updated from:6602fb9134. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	177
linux-devel-x86_64	OK	232
source / vignettes	OK	251
linux-release-x86_64	OK	210
macos-release-arm64	OK	180
macos-oldrel-arm64	OK	196
windows-devel	OK	491
windows-release	OK	524
windows-oldrel	OK	479
wasm-release	OK	117

Exports:getExprSummary getIntens getProbeConcs getSDSummary ilm plotILM plotIntens

Dependencies:affxparser affy affyio Biobase BiocGenerics BiocManager Biostrings crayon gcrma generics IRanges preprocessCore S4Vectors Seqinfo XVector

affyILM1.3.0

Introduction | Getting started | More Examples with options

Rendered fromaffyILM.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
affyILM	ilm
Class to contain the results of an ilm calculation	ILM ILM-class
Methods to access the results of ilm.	getExprSummary getExprSummary,ILM,character-method getExprSummary,ILM,missing-method getExprSummary,ILM-method getExprSummary-methods getIntens getIntens,ILM,character-method getIntens,ILM,missing-method getIntens,ILM-method getIntens-methods getProbeConcs getProbeConcs,ILM,character-method getProbeConcs,ILM,missing-method getProbeConcs,ILM-method getProbeConcs-methods getSDSummary getSDSummary,ILM,character-method getSDSummary,ILM,missing-method getSDSummary,ILM-method getSDSummary-methods show show,ILM-method [,ILM-method
plotILM	plotILM plotILM,ILM,character-method plotILM,ILM,missing-method plotILM,ILM-method
plotIntens	plotIntens plotIntens,ILM,character-method plotIntens,ILM,missing-method plotIntens,ILM-method