Package: affyILM 1.65.0

Myriam Kroll and Fabrice Berger

affyILM: Linear Model of background subtraction and the Langmuir isotherm

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Authors:K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

affyILM_1.65.0.tar.gz
affyILM_1.65.0.zip(r-4.7)affyILM_1.65.0.zip(r-4.6)affyILM_1.65.0.zip(r-4.5)
affyILM_1.65.0.tgz(r-4.6-any)affyILM_1.65.0.tgz(r-4.5-any)
affyILM_1.65.0.tar.gz(r-4.7-any)affyILM_1.65.0.tar.gz(r-4.6-any)
affyILM_1.65.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
affyILM/json (API)

# Install 'affyILM' in R:

install.packages('affyILM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:affyILM-1.65.0(bioc 3.24)affyILM-1.64.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray onechannel preprocessing

3.60 score 1 scripts 493 downloads 2 mentions 7 exports 15 dependencies

Last updated from:6602fb9134. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	162
linux-devel-x86_64	OK	247
source / vignettes	OK	188
linux-release-x86_64	OK	301
macos-release-arm64	OK	143
macos-oldrel-arm64	OK	118
windows-devel	OK	419
windows-release	OK	504
windows-oldrel	OK	442
wasm-release	OK	127

Exports:getExprSummary getIntens getProbeConcs getSDSummary ilm plotILM plotIntens

Dependencies:affxparser affy affyio Biobase BiocGenerics BiocManager Biostrings crayon gcrma generics IRanges preprocessCore S4Vectors Seqinfo XVector

affyILM1.3.0

Rendered fromaffyILM.Rnwusingutils::Sweaveon May 31 2026.

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
affyILM	ilm
Class to contain the results of an ilm calculation	ILM ILM-class
Methods to access the results of ilm.	getExprSummary getExprSummary,ILM,character-method getExprSummary,ILM,missing-method getExprSummary,ILM-method getExprSummary-methods getIntens getIntens,ILM,character-method getIntens,ILM,missing-method getIntens,ILM-method getIntens-methods getProbeConcs getProbeConcs,ILM,character-method getProbeConcs,ILM,missing-method getProbeConcs,ILM-method getProbeConcs-methods getSDSummary getSDSummary,ILM,character-method getSDSummary,ILM,missing-method getSDSummary,ILM-method getSDSummary-methods show show,ILM-method [,ILM-method
plotILM	plotILM plotILM,ILM,character-method plotILM,ILM,missing-method plotILM,ILM-method
plotIntens	plotIntens plotIntens,ILM,character-method plotIntens,ILM,missing-method plotIntens,ILM-method