{
  "_id": "6ae5d9b38d250e7ad09f3ea4",
  "Package": "affyILM",
  "Type": "Package",
  "Title": "Linear Model of background subtraction and the Langmuir isotherm",
  "Version": "1.65.0",
  "Date": "2010-03-17",
  "Author": "K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon",
  "Maintainer": "Myriam Kroll and Fabrice Berger <fabrice.berger@gmail.com>",
  "Description": "affyILM is a preprocessing tool which estimates gene\nexpression levels for Affymetrix Gene Chips. Input from\nphysical chemistry is employed to first background subtract\nintensities before calculating concentrations on behalf of the\nLangmuir model.",
  "biocViews": "Microarray, OneChannel, Preprocessing",
  "License": "GPL-3",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:34:41 UTC",
  "RemoteUrl": "https://github.com/bioc/affyILM",
  "RemoteRef": "HEAD",
  "RemoteSha": "6602fb9134c48e5aff787d47abae891e98b20056",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-31 10:49:06 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "affyILM_1.65.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/867763e71812fc0ca382dcdc38539f8ebb56732ef4b83d2e95ed816619219a49",
  "_filesize": 229658,
  "_sha256": "867763e71812fc0ca382dcdc38539f8ebb56732ef4b83d2e95ed816619219a49",
  "_expires": "2027-02-08T12:06:09.000Z",
  "_created": "2026-10-31T10:49:06.000Z",
  "_published": "2026-10-31T12:06:10.986Z",
  "_upstream": "https://github.com/bioc/affyILM",
  "_status": "success",
  "_maintainer": {
    "name": "Myriam Kroll and Fabrice Berger",
    "email": "fabrice.berger@gmail.com"
  },
  "_jobs": [
    {
      "job": 124517278936,
      "time": 146,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "13039314215"
    },
    {
      "job": 124517278977,
      "time": 252,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13040103415"
    },
    {
      "job": 124517279020,
      "time": 253,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "13039769758"
    },
    {
      "job": 124517278966,
      "time": 146,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13041612088"
    },
    {
      "job": 124517279044,
      "time": 158,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13041638699"
    },
    {
      "job": 124516510786,
      "time": 234,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "13040127666"
    },
    {
      "job": 124517278990,
      "time": 108,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13039953985"
    },
    {
      "job": 124517279016,
      "time": 321,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13039694959"
    },
    {
      "job": 124517278951,
      "time": 430,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13039154738"
    },
    {
      "job": 124517279210,
      "time": 367,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13040340627"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 16
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505",
  "_commit": {
    "id": "6602fb9134c48e5aff787d47abae891e98b20056",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379681
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "gcrma",
      "role": "Depends"
    },
    {
      "package": "affxparser",
      "version": ">= 1.16.0",
      "role": "Imports"
    },
    {
      "package": "affy",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "AffymetrixDataTestFiles",
      "role": "Suggests"
    },
    {
      "package": "hgfocusprobe",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.65.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.64.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "microarray",
    "onechannel",
    "preprocessing"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 481,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 640,
    "source": "https://www.bioconductor.org/packages/stats/bioc/affyILM"
  },
  "_mentions": 2,
  "_searchresults": 6,
  "_abi": {
    "exports": [
      {
        "key": "affyILM::ILM",
        "hash": "b88556350182be52"
      }
    ],
    "imports": []
  },
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/affyILM.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "getExprSummary",
    "getIntens",
    "getProbeConcs",
    "getSDSummary",
    "ilm",
    "plotILM",
    "plotIntens"
  ],
  "_help": [
    {
      "page": "ilm",
      "title": "affyILM",
      "topics": [
        "ilm"
      ]
    },
    {
      "page": "ILM-class",
      "title": "Class to contain the results of an ilm calculation",
      "topics": [
        "ILM",
        "ILM-class"
      ]
    },
    {
      "page": "ilm-methods",
      "title": "Methods to access the results of ilm.",
      "topics": [
        "getExprSummary",
        "getExprSummary,ILM,character-method",
        "getExprSummary,ILM,missing-method",
        "getExprSummary,ILM-method",
        "getExprSummary-methods",
        "getIntens",
        "getIntens,ILM,character-method",
        "getIntens,ILM,missing-method",
        "getIntens,ILM-method",
        "getIntens-methods",
        "getProbeConcs",
        "getProbeConcs,ILM,character-method",
        "getProbeConcs,ILM,missing-method",
        "getProbeConcs,ILM-method",
        "getProbeConcs-methods",
        "getSDSummary",
        "getSDSummary,ILM,character-method",
        "getSDSummary,ILM,missing-method",
        "getSDSummary,ILM-method",
        "getSDSummary-methods",
        "show",
        "show,ILM-method",
        "[,ILM-method"
      ]
    },
    {
      "page": "plotILM",
      "title": "plotILM",
      "topics": [
        "plotILM",
        "plotILM,ILM,character-method",
        "plotILM,ILM,missing-method",
        "plotILM,ILM-method"
      ]
    },
    {
      "page": "plotIntens",
      "title": "plotIntens",
      "topics": [
        "plotIntens",
        "plotIntens,ILM,character-method",
        "plotIntens,ILM,missing-method",
        "plotIntens,ILM-method"
      ]
    }
  ],
  "_rundeps": [
    "affxparser",
    "affy",
    "affyio",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "Biostrings",
    "crayon",
    "gcrma",
    "generics",
    "IRanges",
    "preprocessCore",
    "S4Vectors",
    "Seqinfo",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "affyILM.Rnw",
      "filename": "affyILM.pdf",
      "title": "affyILM1.3.0",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Getting started",
        "More Examples with options"
      ],
      "created": "2013-11-01 20:13:32",
      "modified": "2013-11-01 20:13:32",
      "commits": 1
    }
  ],
  "_score": 3.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "affyilm",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.65.0",
      "date": "2026-10-31T10:52:52.000Z",
      "distro": "resolute",
      "commit": "6602fb9134c48e5aff787d47abae891e98b20056",
      "fileid": "https://r2.ropensci.org/8da10514d41ac7649ec9d0835c0b03b196674477a4940d037615d40b1332690a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.65.0",
      "date": "2026-10-31T10:52:53.000Z",
      "distro": "resolute",
      "commit": "6602fb9134c48e5aff787d47abae891e98b20056",
      "fileid": "https://r2.ropensci.org/38c4509a5bdf662c56080ea524d4a6c009978400e23bc75cdbf6365cd7b1009c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.65.0",
      "date": "2026-10-31T11:51:11.000Z",
      "commit": "6602fb9134c48e5aff787d47abae891e98b20056",
      "fileid": "https://r2.ropensci.org/aee394f8e697ab2e3c76da2525503bdd1f0a0b5d4ec9d7aa2615b9706dfea0f3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "1.65.0",
      "date": "2026-10-31T12:04:35.000Z",
      "commit": "6602fb9134c48e5aff787d47abae891e98b20056",
      "fileid": "https://r2.ropensci.org/6f6fc57328d5b5ab5b35bec923af29ab3cd80c0b6442bfc276e2cd7e3aaef419",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.65.0",
      "date": "2026-10-31T10:51:15.000Z",
      "commit": "6602fb9134c48e5aff787d47abae891e98b20056",
      "fileid": "https://r2.ropensci.org/3e9b637ad410173752b850352c45ea4da710ed76909a0201933ac09f096aa6a6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.65.0",
      "date": "2026-10-31T10:53:53.000Z",
      "commit": "6602fb9134c48e5aff787d47abae891e98b20056",
      "fileid": "https://r2.ropensci.org/ea14bfc5b91d41523fc3c212fc37cda443336e8db9c6c4caf4e9a089ce8ab61b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.65.0",
      "date": "2026-10-31T10:55:22.000Z",
      "commit": "6602fb9134c48e5aff787d47abae891e98b20056",
      "fileid": "https://r2.ropensci.org/75607fab4e0ccf7407280bb5dc293c3a7aa1526107f8a595d7ebf85d6d0c30f1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "1.65.0",
      "date": "2026-10-31T10:54:35.000Z",
      "commit": "6602fb9134c48e5aff787d47abae891e98b20056",
      "fileid": "https://r2.ropensci.org/56fc5e52d59c1c4643b7ddf43771ac0e1879a710e792bae61f7a77c8c1d878b9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194023505"
    }
  ]
}