{ "_id": "6a494bbaf6c47c44194991f6", "Package": "affyILM", "Type": "Package", "Title": "Linear Model of background subtraction and the Langmuir isotherm", "Version": "1.65.0", "Date": "2010-03-17", "Author": "K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon", "Maintainer": "Myriam Kroll and Fabrice Berger ", "Description": "affyILM is a preprocessing tool which estimates gene\nexpression levels for Affymetrix Gene Chips. Input from\nphysical chemistry is employed to first background subtract\nintensities before calculating concentrations on behalf of the\nLangmuir model.", "biocViews": "Microarray, OneChannel, Preprocessing", "License": "GPL-3", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:34:41 UTC", "RemoteUrl": "https://github.com/bioc/affyILM", "RemoteRef": "HEAD", "RemoteSha": "6602fb9134c48e5aff787d47abae891e98b20056", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-03 18:32:32 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "affyILM_1.65.0.tar.gz", "_fileid": "https://r2.ropensci.org/2d5dfe77b91475bd80ff66b04c0731e673078c7b10850952421b66dc51d423b5", "_filesize": 229979, "_sha256": "2d5dfe77b91475bd80ff66b04c0731e673078c7b10850952421b66dc51d423b5", "_expires": "2026-10-12T18:06:49.000Z", "_created": "2026-07-03T18:32:32.000Z", "_published": "2026-07-04T18:06:50.826Z", "_bioccheck": { "error": 1, "warning": 3, "note": 15 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797", "_status": "success", "_upstream": "https://github.com/bioc/affyILM", "_commit": { "id": "6602fb9134c48e5aff787d47abae891e98b20056", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379681 }, "_maintainer": { "name": "Myriam Kroll and Fabrice Berger", "email": "fabrice.berger@gmail.com" }, "_distro": "resolute", "_jobs": [ { "job": 85154849586, "time": 177, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8072986003" }, { "job": 85154849514, "time": 232, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8072998189" }, { "job": 85154849548, "time": 210, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8072993319" }, { "job": 85154849593, "time": 196, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8072989873" }, { "job": 85154849509, "time": 180, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8072986575" }, { "job": 85154849207, "time": 251, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8072946968" }, { "job": 85154849450, "time": 117, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8072972974" }, { "job": 85154849556, "time": 491, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8073053973" }, { "job": 85154849639, "time": 479, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8073051091" }, { "job": 85154849588, "time": 524, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8073061451" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "gcrma", "role": "Depends" }, { "package": "affxparser", "version": ">= 1.16.0", "role": "Imports" }, { "package": "affy", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "Biobase", "role": "Imports" }, { "package": "AffymetrixDataTestFiles", "role": "Suggests" }, { "package": "hgfocusprobe", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.65.0", "bioc": "3.24" }, { "branch": "release", "version": "1.64.0", "bioc": "3.23" } ], "_topics": [ "microarray", "onechannel", "preprocessing" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_mentions": 2, "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/affyILM.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "getExprSummary", "getIntens", "getProbeConcs", "getSDSummary", "ilm", "plotILM", "plotIntens" ], "_help": [ { "page": "ilm", "title": "affyILM", "topics": [ "ilm" ] }, { "page": "ILM-class", "title": "Class to contain the results of an ilm calculation", "topics": [ "ILM", "ILM-class" ] }, { "page": "ilm-methods", "title": "Methods to access the results of ilm.", "topics": [ "getExprSummary", "getExprSummary,ILM,character-method", "getExprSummary,ILM,missing-method", "getExprSummary,ILM-method", "getExprSummary-methods", "getIntens", "getIntens,ILM,character-method", "getIntens,ILM,missing-method", "getIntens,ILM-method", "getIntens-methods", "getProbeConcs", "getProbeConcs,ILM,character-method", "getProbeConcs,ILM,missing-method", "getProbeConcs,ILM-method", "getProbeConcs-methods", "getSDSummary", "getSDSummary,ILM,character-method", "getSDSummary,ILM,missing-method", "getSDSummary,ILM-method", "getSDSummary-methods", "show", "show,ILM-method", "[,ILM-method" ] }, { "page": "plotILM", "title": "plotILM", "topics": [ "plotILM", "plotILM,ILM,character-method", "plotILM,ILM,missing-method", "plotILM,ILM-method" ] }, { "page": "plotIntens", "title": "plotIntens", "topics": [ "plotIntens", "plotIntens,ILM,character-method", "plotIntens,ILM,missing-method", "plotIntens,ILM-method" ] } ], "_rundeps": [ "affxparser", "affy", "affyio", "Biobase", "BiocGenerics", "BiocManager", "Biostrings", "crayon", "gcrma", "generics", "IRanges", "preprocessCore", "S4Vectors", "Seqinfo", "XVector" ], "_vignettes": [ { "source": "affyILM.Rnw", "filename": "affyILM.pdf", "title": "affyILM1.3.0", "engine": "utils::Sweave", "headings": [ "Introduction", "Getting started", "More Examples with options" ], "created": "2013-11-01 20:13:32", "modified": "2013-11-01 20:13:32", "commits": 1 } ], "_score": 3.6020599913279625, "_indexed": true, "_nocasepkg": "affyilm", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.65.0", "date": "2026-07-03T18:35:34.000Z", "distro": "resolute", "commit": "6602fb9134c48e5aff787d47abae891e98b20056", "fileid": "https://r2.ropensci.org/9bc5409f08c5ccb2485fb0b395cd75808c39d7a330ca1a3fcfc8209c1881b045", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797" }, { "r": "4.6.1", "os": "linux", "version": "1.65.0", "date": "2026-07-03T18:35:19.000Z", "distro": "resolute", "commit": "6602fb9134c48e5aff787d47abae891e98b20056", "fileid": "https://r2.ropensci.org/1e551920b203098b33723da16d7735d85ad3d684de3a824295434d6079c91ca6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797" }, { "r": "4.5.3", "os": "mac", "version": "1.65.0", "date": "2026-07-03T18:34:55.000Z", "commit": "6602fb9134c48e5aff787d47abae891e98b20056", "fileid": "https://r2.ropensci.org/802f62badc6da2cc780327b4193bafb7c08184e00ae99372adba8c77ed2f441d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797" }, { "r": "4.6.1", "os": "mac", "version": "1.65.0", "date": "2026-07-03T18:34:31.000Z", "commit": "6602fb9134c48e5aff787d47abae891e98b20056", "fileid": "https://r2.ropensci.org/c85a1416687d647ca51f5f5bf0898dcdce18e82925d0b767879d389e74767b34", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797" }, { "r": "4.6.0", "os": "wasm", "version": "1.65.0", "date": "2026-07-03T18:34:53.000Z", "commit": "6602fb9134c48e5aff787d47abae891e98b20056", "fileid": "https://r2.ropensci.org/d61325e16c456ca9e61afb3f94206d8a77c456ff3777a8eeb3157a1c97e6dd9e", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797" }, { "r": "4.7.0", "os": "win", "version": "1.65.0", "date": "2026-07-03T18:39:42.000Z", "commit": "6602fb9134c48e5aff787d47abae891e98b20056", "fileid": "https://r2.ropensci.org/2f4587d39989bd0c26db1e48d27b930c5f331838feafa600f2eff7fc603b8d95", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797" }, { "r": "4.5.3", "os": "win", "version": "1.65.0", "date": "2026-07-03T18:39:38.000Z", "commit": "6602fb9134c48e5aff787d47abae891e98b20056", "fileid": "https://r2.ropensci.org/8902cb5914a4de3de805376b8d42477703ab2e5e41b4e041f34bb2164737cce0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797" }, { "r": "4.6.1", "os": "win", "version": "1.65.0", "date": "2026-07-03T18:40:09.000Z", "commit": "6602fb9134c48e5aff787d47abae891e98b20056", "fileid": "https://r2.ropensci.org/e31cd4a657dd178bb65956cebf018b0d924fd420c3eba8830e140402dbd9114f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28677525797" } ] }