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Xhyb.Rnwusingutils::SweavePackage: XhybCasneuf 1.51.0
Tineke Casneuf
XhybCasneuf: EBI/PSB cross-hybridisation study package
Cross-hybridisation study on the ATH1 Affymetrix GeneChip
Authors:
XhybCasneuf_1.51.0.tar.gz
XhybCasneuf_1.51.0.tar.gz(r-4.7-any)XhybCasneuf_1.51.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
XhybCasneuf/json (API)
| # Install 'XhybCasneuf' in R: |
| install.packages('XhybCasneuf', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- AffysTissue - Affymetrix' CDF probe set pairs
- AffysTissue.noBl - Affymetrix' CDF probe set pairs
- AffysTissueMC - Affymetrix' CDF probe set pairs
- CustomsTissue - Custom-made CDF's probe set pairs
- CustomsTissue.noBl - Custom-made CDF's probe set pairs
- CustomsTissueMC - Custom-made CDF's probe set pairs
- ex1 - Cross-hybridisation example
- ex2 - Cross-hybridisation example
- ex3 - Cross-hybridisation example
On BioConductor:XhybCasneuf-1.51.0(data/experiment 3.24)XhybCasneuf-1.50.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatatissuemicroarraydatatissuemicroarraydatadatapkg
Last updated from:cd3922efa8. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 142 | ||
| linux-devel | NOTE | 241 | ||
| source / vignettes | OK | 208 | ||
| linux-release | NOTE | 249 |
Exports:plotExamplerunSimulation
Dependencies:affyaffyioAnnotationDbiaskpassath1121501cdfBiobaseBiocBaseUtilsBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluehttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigpngpreprocessCoreR6RColorBrewerrlangRSQLiteS4VectorsSeqinfosystinesath1cdfvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Affymetrix' CDF probe set pairs | AffysTissue AffysTissue.noBl AffysTissueMC |
| Custom-made CDF's probe set pairs | CustomsTissue CustomsTissue.noBl CustomsTissueMC |
| Cross-hybridisation example | ex1 ex2 ex3 |
| Cross-hybridisation simulation | runSimulation |
| Class "XhybExamples" | plotExample plotExample,XhybExamples-method XhybExamples-class |