Package: Wrench 1.25.0
Wrench: Wrench normalization for sparse count data
Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.
Authors:
Wrench_1.25.0.tar.gz
Wrench_1.25.0.zip(r-4.5)Wrench_1.25.0.zip(r-4.4)Wrench_1.25.0.zip(r-4.3)
Wrench_1.25.0.tgz(r-4.4-any)Wrench_1.25.0.tgz(r-4.3-any)
Wrench_1.25.0.tar.gz(r-4.5-noble)Wrench_1.25.0.tar.gz(r-4.4-noble)
Wrench_1.25.0.tgz(r-4.4-emscripten)Wrench_1.25.0.tgz(r-4.3-emscripten)
Wrench.pdf |Wrench.html✨
Wrench/json (API)
# Install 'Wrench' in R: |
install.packages('Wrench', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hcbravolab/wrench/issues
On BioConductor:Wrench-1.25.0(bioc 3.21)Wrench-1.24.0(bioc 3.20)
normalizationsequencingsoftware
Last updated 2 months agofrom:4f4b817329. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 19 2024 |
R-4.5-win | OK | Dec 19 2024 |
R-4.5-linux | OK | Dec 19 2024 |
R-4.4-win | OK | Dec 19 2024 |
R-4.4-mac | OK | Dec 19 2024 |
R-4.3-win | OK | Dec 19 2024 |
R-4.3-mac | OK | Dec 19 2024 |
Exports:wrench
Dependencies:latticelimmalocfitmatrixStatsstatmod
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Obtain robust means. . | .estimSummary |
Log Postive-conditional weight computations for wrench estimators. | .getCondLogWeights |
Postive-conditional weight computations for wrench estimators. | .getCondWeights |
Obtains logistic fits for presence/absence and fitted probabilities of a zero occurring. | .getHurdle |
Marginal weight computations for wrench estimators. | .getMargWeights |
This function generates the reference. | .getReference |
Obtain variances of logged counts. | .gets2 |
Get weighted means for matrix | .getWeightedMean |
Get weighted median for matrix | .getWeightedMedian |
Normalization for sparse, under-sampled count data. | wrench |