Package: Ularcirc 1.25.0

David Humphreys

Ularcirc: Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.

Authors:David Humphreys [aut, cre]

Ularcirc_1.25.0.tar.gz
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Ularcirc.pdf |Ularcirc.html✨
Ularcirc/json (API)
NEWS

# Install 'Ularcirc' in R:
install.packages('Ularcirc', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:Ularcirc-1.25.0(bioc 3.21)Ularcirc-1.24.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

datarepresentationvisualizationgeneticssequencingannotationcoveragealternativesplicingdifferentialsplicing

4.30 score 4 scripts 223 downloads 2 mentions 11 exports 150 dependencies

Last updated 5 months agofrom:a6da8769c9. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 19 2025
R-4.5-winWARNINGMar 19 2025
R-4.5-macWARNINGMar 19 2025
R-4.5-linuxWARNINGMar 19 2025
R-4.4-winWARNINGMar 19 2025
R-4.4-macWARNINGMar 19 2025
R-4.4-linuxWARNINGMar 19 2025
R-4.3-winWARNINGMar 19 2025
R-4.3-macWARNINGMar 19 2025

Exports:BSJ_detailsbsj_fastq_generatebsj_to_circRNA_sequencechimericStatsCompatible_Annotation_DBsFilterChimericJuncsloadSTAR_chimericplot_AllJunctionsRAD_scoreSelectUniqueJunctionsUlarcirc

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomebslibcachemclicodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydigestdplyrDTevaluatefansifarverfastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2ggplotifyggrepelgluegridGraphicsgsubfngtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemirbase.dbmomentsmunsellnlmeopensslOrganism.dplyrpillarpkgconfigplogrplotgardenerplyrangespngpromisesprotopurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlrestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassscalesshinyshinydashboardshinyFilesshinyjssnowsourcetoolsSparseArraystrawrstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXMLxtableXVectoryamlyulab.utils

Ularcirc: A shiny application for canonical and back splicing analysis

David Humphreys, Nicolas Fossat, Patrick Tam, Joshua Ho

Rendered fromUlarcirc.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2019-10-24
Started: 2019-08-23