Package: Ularcirc 1.31.0

David Humphreys

Ularcirc: Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.

Authors:David Humphreys [aut, cre]

Ularcirc_1.31.0.tar.gz
Ularcirc_1.31.0.zip(r-4.7)Ularcirc_1.31.0.zip(r-4.6)Ularcirc_1.31.0.zip(r-4.5)
Ularcirc_1.31.0.tgz(r-4.6-any)Ularcirc_1.31.0.tgz(r-4.5-any)
Ularcirc_1.31.0.tar.gz(r-4.7-any)Ularcirc_1.31.0.tar.gz(r-4.6-any)
Ularcirc_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Ularcirc/json (API)
NEWS

# Install 'Ularcirc' in R:
install.packages('Ularcirc', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:Ularcirc-1.31.0(bioc 3.24)Ularcirc-1.30.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

datarepresentationvisualizationgeneticssequencingannotationcoveragealternativesplicingdifferentialsplicing

4.70 score 6 scripts 348 downloads 2 mentions 13 exports 148 dependencies

Last updated from:9e0304952e. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR333
linux-devel-x86_64WARNING398
source / vignettesOK361
linux-release-x86_64WARNING413
macos-release-arm64WARNING277
macos-oldrel-arm64WARNING224
windows-develWARNING264
windows-releaseWARNING274
windows-oldrelWARNING272
wasm-releaseOK261

Exports:BSJ_detailsbsj_fastq_generatebsj_to_circRNA_sequencechimericStatscircSequenceCompatible_Annotation_DBsFilterChimericJuncsloadSTAR_chimericmiR_binding_site_Analysisplot_AllJunctionsRAD_scoreSelectUniqueJunctionsUlarcirc

Dependencies:abindAnnotationDbiAnnotationHubaskpassbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakeBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomebslibcachemcigarilloclicodetoolscommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydigestdir.expirydplyrDTevaluatefarverfastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2ggplotifyggrepelgluegridGraphicsgsubfngtablehighrhtmltoolshtmlwidgetshttpuvhttrhttr2IRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimemomentsopensslotelpillarpkgconfigplotgardenerplyrangespngpromisesprotopurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlrestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinydashboardshinyFilesshinyjssnowsourcetoolsSparseArraystrawrstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXMLxtableXVectoryamlyulab.utils

Ularcirc: A shiny application for canonical and back splicing analysis

David Humphreys, Nicolas Fossat, Patrick Tam, Joshua Ho

Rendered fromUlarcirc.Rmdusingknitr::rmarkdownon May 12 2026.

Last update: 2019-10-24
Started: 2019-08-23