NEWS

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Ularcirc 1.3.22

NEW FEATURES

• New stand alone functions that don't require shiny app : bsj_to_circRNA_sequence() and bsj_fastq_generate()

BUG FIXES

• BUG fix: All warnings in bioconductor now resolved
• BUG fix: Added dependencies to DESCRIPTION to allow automatic install

Ularcirc 1.3.1

BUG FIXES

• BUG fix: Fixed code in Compatible_Annotation_DBs examples that was causing error in bioconductor builds.

Ularcirc 1.2.2

NEW FEATURES

• Can now accept CIRI2 and circExplorer inputs
• Automatically group samples upon import

Ularcirc 1.2.1

BUG FIXES

• BUG fix: when user selects table entry from group data it now is automatically selected in gene view

Ularcirc 1.2.0

NEW FEATURES

• Added a stand alone function to generate fastq files from chimeric output. This is a stand alone feature (i.e. not from within Ularcirc shiny app) which is run from R command prompt.
• Ularcirc now compatible with STAR 2.6 chimeric output.
• Added new metric called "FSJ support", which can be used to filter out false positives from low count (ie. < 10) BSJ data. Can also be applied to entire data set. This should not be used for RNase R treated data sets.
• Added Ularcirc shiny app button to generate PCA plot once groups are defined.
• Can now read in geneReads count matrix generated by STAR aligner.
• Added download buttons for displayed tabled under "Gene_view" tab

BUG FIXES

• Improved methodology in calculating RAD score.
• Fixed error when merging BSJ counts from unstranded RNA-Seq data.
• Fixed TwoSzabo data set which was previously corrupted. Added ReadsPerGene.
• Changed various text on various buttons and menu screens

Removed

• filter based on count number
• side bar check menu boxes of unimplemented or redunant functions.

Ularcirc 1.0.0

• Bioconductor release.

Ularcirc 0.99.0

• Pre-Bioconductor submission.