Package: TnT 1.35.0

Jialin Ma

TnT: Interactive Visualization for Genomic Features

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Authors:Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

TnT_1.35.0.tar.gz
TnT_1.35.0.zip(r-4.7)TnT_1.35.0.zip(r-4.6)TnT_1.35.0.zip(r-4.5)
TnT_1.35.0.tgz(r-4.6-any)TnT_1.35.0.tgz(r-4.5-any)
TnT_1.35.0.tar.gz(r-4.7-any)TnT_1.35.0.tar.gz(r-4.6-any)
TnT_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TnT/json (API)

# Install 'TnT' in R:

install.packages('TnT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/marlin-na/tnt/issues

On BioConductor:TnT-1.35.0(bioc 3.24)TnT-1.34.0(bioc 3.23)

infrastructure visualization bioconductor genome-browser htmlwidgets shiny

7.18 score 15 stars 17 scripts 17 mentions 27 exports 41 dependencies

Last updated from:42cb7649e2. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	194
linux-devel-x86_64	OK	231
source / vignettes	OK	233
linux-release-x86_64	OK	308
macos-release-arm64	OK	111
macos-oldrel-arm64	OK	181
windows-devel	OK	188
windows-release	OK	147
windows-oldrel	OK	157
wasm-release	OK	194

Exports:AreaTrack BlockTrack FeatureTrack GeneTrackFromTxDb GroupFeatureTrack LineTrack mapcol merge PinTrack renderTnT saveTnT strandlabel TnTBoard TnTGenome TnTOutput tooltip tooltip<-trackData trackData<-tracklist tracklist<-trackSpec trackSpec<-trackWidget TxTrackFromGRanges TxTrackFromTxDb VlineTrack

Dependencies:askpass base64enc Biobase BiocGenerics bslib cachem cli curl data.table digest evaluate fastmap fontawesome fs generics GenomeInfoDb GenomicRanges highr htmltools htmlwidgets httr IRanges jquerylib jsonlite knitr lifecycle memoise mime openssl R6 rappdirs rlang rmarkdown S4Vectors sass Seqinfo sys tinytex UCSC.utils xfun yaml

Introduction to TnT

Motivation | Install | Track Constructors | Track Manipulation | TnTBoard and TnTGenome

Rendered fromintroduction.Rmdusingknitr::rmarkdown

Last update: 2018-08-30
Started: 2017-08-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Composite Track	composite-track merge,TnTTrack,missing-method merge,TnTTrack,TnTTrack-method merge-track
Printing TnTBoard in Rmarkdown	knit_print.TnTBoard
Scale Qualitative Values to Color	mapcol
Range of Tracks	range,CompositeTrack-method range,RangeBasedTrack-method range-TnTTrack
Range of TnTBoard	range,TnTBoard-method
Save a TnTBoard to an HTML file	saveTnT
Seqinfo of TnTTrack and TnTBoard	seqinfo seqinfo,CompositeTrack-method seqinfo,RangeBasedTrack-method seqinfo,TnTBoard-method seqinfo<-,CompositeTrack-method seqinfo<-,RangeBasedTrack-method seqlevelsInUse,CompositeTrack-method seqlevelsInUse,RangeBasedTrack-method
Display Labels with Strand	strandlabel
Shiny bindings for TnT	renderTnT TnT-shiny TnTOutput
TnTBoard	TnTBoard tntboard TnTGenome tntgenome
Access Track Tooltips	tooltip tooltip,TnTTrack-method tooltip,TrackData-method tooltip<- tooltip<-,TnTTrack,data.frame-method tooltip<-,TrackData,data.frame-method
Track Constructors	AreaTrack BlockTrack FeatureTrack GeneTrackFromTxDb GroupFeatureTrack LineTrack PinTrack track-constructors TxTrackFromGRanges TxTrackFromTxDb VlineTrack
Access Track Data	$,TnTTrack-method $<-,TnTTrack-method trackData trackdata trackData<-
Track List in TnTBoard	tracklist tracklist<-
Track Spec	trackSpec trackSpec<-
Convert a TnTBoard to htmlwidget	trackWidget