Package: TnT 1.29.0

Jialin Ma

TnT: Interactive Visualization for Genomic Features

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Authors:Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

TnT_1.29.0.tar.gz
TnT_1.29.0.zip(r-4.5)TnT_1.29.0.zip(r-4.4)TnT_1.29.0.zip(r-4.3)
TnT_1.29.0.tgz(r-4.4-any)TnT_1.29.0.tgz(r-4.3-any)
TnT_1.29.0.tar.gz(r-4.5-noble)TnT_1.29.0.tar.gz(r-4.4-noble)
TnT_1.29.0.tgz(r-4.4-emscripten)TnT_1.29.0.tgz(r-4.3-emscripten)
TnT.pdf |TnT.html✨
TnT/json (API)
NEWS

# Install 'TnT' in R:

install.packages('TnT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/marlin-na/tnt/issues

On BioConductor:TnT-1.29.0(bioc 3.21)TnT-1.28.0(bioc 3.20)

infrastructure visualization bioconductor genome-browser htmlwidgets shiny

7.15 score 14 stars 17 scripts 130 downloads 17 mentions 27 exports 44 dependencies

Last updated 2 months agofrom:3af21c4d6a. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 30 2024
R-4.5-win	OK	Nov 30 2024
R-4.5-linux	OK	Nov 30 2024
R-4.4-win	OK	Nov 30 2024
R-4.4-mac	OK	Nov 30 2024
R-4.3-win	OK	Nov 30 2024
R-4.3-mac	OK	Nov 30 2024

Exports:AreaTrack BlockTrack FeatureTrack GeneTrackFromTxDb GroupFeatureTrack LineTrack mapcol merge PinTrack renderTnT saveTnT strandlabel TnTBoard TnTGenome TnTOutput tooltip tooltip<-trackData trackData<-tracklist tracklist<-trackSpec trackSpec<-trackWidget TxTrackFromGRanges TxTrackFromTxDb VlineTrack

Dependencies:askpass base64enc Biobase BiocGenerics bslib cachem cli curl data.table digest evaluate fastmap fontawesome fs generics GenomeInfoDb GenomeInfoDbData GenomicRanges glue highr htmltools htmlwidgets httr IRanges jquerylib jsonlite knitr lifecycle memoise mime openssl R6 rappdirs rlang rmarkdown S4Vectors sass sys tinytex UCSC.utils xfun XVector yaml zlibbioc

Introduction to TnT

Jialin Ma

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Nov 30 2024.

Last update: 2018-08-30
Started: 2017-08-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Composite Track	composite-track merge,TnTTrack,missing-method merge,TnTTrack,TnTTrack-method merge-track
Printing TnTBoard in Rmarkdown	knit_print.TnTBoard
Scale Qualitative Values to Color	mapcol
Range of Tracks	range,CompositeTrack-method range,RangeBasedTrack-method range-TnTTrack
Range of TnTBoard	range,TnTBoard-method
Save a TnTBoard to an HTML file	saveTnT
Seqinfo of TnTTrack and TnTBoard	seqinfo seqinfo,CompositeTrack-method seqinfo,RangeBasedTrack-method seqinfo,TnTBoard-method seqinfo<-,CompositeTrack-method seqinfo<-,RangeBasedTrack-method seqlevelsInUse,CompositeTrack-method seqlevelsInUse,RangeBasedTrack-method
Display Labels with Strand	strandlabel
Shiny bindings for TnT	renderTnT TnT-shiny TnTOutput
TnTBoard	TnTBoard tntboard TnTGenome tntgenome
Access Track Tooltips	tooltip tooltip,TnTTrack-method tooltip,TrackData-method tooltip<- tooltip<-,TnTTrack,data.frame-method tooltip<-,TrackData,data.frame-method
Track Constructors	AreaTrack BlockTrack FeatureTrack GeneTrackFromTxDb GroupFeatureTrack LineTrack PinTrack track-constructors TxTrackFromGRanges TxTrackFromTxDb VlineTrack
Access Track Data	$,TnTTrack-method $<-,TnTTrack-method trackData trackdata trackData<-
Track List in TnTBoard	tracklist tracklist<-
Track Spec	trackSpec trackSpec<-
Convert a TnTBoard to htmlwidget	trackWidget