{ "_id": "6a1af0db1d7bb097a09f6b94", "Package": "TnT", "Title": "Interactive Visualization for Genomic Features", "Version": "1.35.0", "Authors@R": "c(person(\"Jialin\", \"Ma\", email=\"marlin-@gmx.cn\", role = c(\"cre\", \"aut\")),\nperson(\"Miguel\", \"Pignatelli\", email=\"emepyc@gmail.com\", role=c(\"aut\")),\nperson(\"Toby\", \"Hocking\", email=\"toby.hocking@r-project.org\", role = c(\"aut\")))", "Description": "A R interface to the TnT javascript library\n(https://github.com/ tntvis) to provide interactive and\nflexible visualization of track-based genomic data.", "biocViews": "Infrastructure, Visualization", "License": "AGPL-3", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "URL": "https://github.com/Marlin-Na/TnT", "BugReports": "https://github.com/Marlin-Na/TnT/issues", "Collate": "'JavascriptCascade.R' 'misc.R' 'tntTracks-trackData.R'\n'tntTracks.R' 'tntBoard.R' 'tntTracks-compilation.R'\n'tntTracks-compositeTrack.R' 'tntTracks-constructors.R'\n'trackWidget.R'", "RoxygenNote": "7.0.2", "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:03:34 UTC", "RemoteUrl": "https://github.com/bioc/TnT", "RemoteRef": "HEAD", "RemoteSha": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:43:50 UTC", "User": "root" }, "Author": "Jialin Ma [cre, aut],\nMiguel Pignatelli [aut],\nToby Hocking [aut]", "Maintainer": "Jialin Ma ", "MD5sum": "20a7d28927bf80d096d4d5de3e1281da", "_user": "bioc", "_type": "src", "_file": "TnT_1.35.0.tar.gz", "_fileid": "fed0f057932683574e29a428893175d71c1ac13547333ee82a2e6495d6b5e64e", "_filesize": 271867, "_sha256": "fed0f057932683574e29a428893175d71c1ac13547333ee82a2e6495d6b5e64e", "_created": "2026-05-30T09:43:50.000Z", "_published": "2026-05-30T14:14:51.467Z", "_jobs": [ { "job": 78640456796, "time": 173, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7307431720" }, { "job": 78640456798, "time": 255, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7307439504" }, { "job": 78640456797, "time": 214, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7307436577" }, { "job": 78640456820, "time": 113, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7308785648" }, { "job": 78640456802, "time": 137, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7308787497" }, { "job": 78639742459, "time": 260, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7307270394" }, { "job": 78640456795, "time": 147, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7307429975" }, { "job": 78640456800, "time": 155, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7307430915" }, { "job": 78640456801, "time": 132, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7307427950" }, { "job": 78640456804, "time": 170, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7307431463" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 10 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/TnT", "_commit": { "id": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381414 }, "_maintainer": { "name": "Jialin Ma", "email": "marlin-@gmx.cn", "login": "marlin-na", "description": "希望迟迟不来 等死了苦苦等待的人", "uuid": 9980776 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4", "role": "Depends" }, { "package": "GenomicRanges", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "htmlwidgets", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "Biobase", "role": "Imports" }, { "package": "GenomeInfoDb", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "knitr", "role": "Imports" }, { "package": "GenomicFeatures", "role": "Suggests" }, { "package": "shiny", "role": "Suggests" }, { "package": "BiocManager", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.35.0", "bioc": "3.24" }, { "branch": "release", "version": "1.34.0", "bioc": "3.23" } ], "_topics": [ "infrastructure", "visualization", "bioconductor", "genome-browser", "htmlwidgets", "shiny" ], "_stars": 15, "_contributors": [ { "user": "marlin-na", "count": 383, "uuid": 9980776 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "jwokaty", "count": 8, "uuid": 1744257 }, { "user": "hpages", "count": 3, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "link-ny", "count": 1, "uuid": 4392950 }, { "user": "lshep", "count": 1, "uuid": 18724380 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 392, "source": "https://www.bioconductor.org/packages/stats/bioc/TnT" }, "_mentions": 17, "_devurl": "https://github.com/marlin-na/tnt", "_searchresults": 19, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/TnT.html", "manual.pdf" ], "_homeurl": "https://github.com/marlin-na/tnt", "_realowner": "bioc", "_cranurl": false, "_exports": [ "AreaTrack", "BlockTrack", "FeatureTrack", "GeneTrackFromTxDb", "GroupFeatureTrack", "LineTrack", "mapcol", "merge", "PinTrack", "renderTnT", "saveTnT", "strandlabel", "TnTBoard", "TnTGenome", "TnTOutput", "tooltip", "tooltip<-", "trackData", "trackData<-", "tracklist", "tracklist<-", "trackSpec", "trackSpec<-", "trackWidget", "TxTrackFromGRanges", "TxTrackFromTxDb", "VlineTrack" ], "_help": [ { "page": "composite-track", "title": "Composite Track", "topics": [ "composite-track", "merge,TnTTrack,missing-method", "merge,TnTTrack,TnTTrack-method", "merge-track" ] }, { "page": "knit_print.TnTBoard", "title": "Printing TnTBoard in Rmarkdown", "topics": [ "knit_print.TnTBoard" ] }, { "page": "mapcol", "title": "Scale Qualitative Values to Color", "topics": [ "mapcol" ] }, { "page": "range-TnTTrack", "title": "Range of Tracks", "topics": [ "range,CompositeTrack-method", "range,RangeBasedTrack-method", "range-TnTTrack" ] }, { "page": "range-TnTBoard-method", "title": "Range of TnTBoard", "topics": [ "range,TnTBoard-method" ] }, { "page": "saveTnT", "title": "Save a TnTBoard to an HTML file", "topics": [ "saveTnT" ] }, { "page": "seqinfo", "title": "Seqinfo of TnTTrack and TnTBoard", "topics": [ "seqinfo", "seqinfo,CompositeTrack-method", "seqinfo,RangeBasedTrack-method", "seqinfo,TnTBoard-method", "seqinfo<-,CompositeTrack-method", "seqinfo<-,RangeBasedTrack-method", "seqlevelsInUse,CompositeTrack-method", "seqlevelsInUse,RangeBasedTrack-method" ] }, { "page": "strandlabel", "title": "Display Labels with Strand", "topics": [ "strandlabel" ] }, { "page": "TnT-shiny", "title": "Shiny bindings for TnT", "topics": [ "renderTnT", "TnT-shiny", "TnTOutput" ] }, { "page": "tntboard", "title": "TnTBoard", "topics": [ "TnTBoard", "tntboard", "TnTGenome", "tntgenome" ] }, { "page": "tooltip", "title": "Access Track Tooltips", "topics": [ "tooltip", "tooltip,TnTTrack-method", "tooltip,TrackData-method", "tooltip<-", "tooltip<-,TnTTrack,data.frame-method", "tooltip<-,TrackData,data.frame-method" ] }, { "page": "track-constructors", "title": "Track Constructors", "topics": [ "AreaTrack", "BlockTrack", "FeatureTrack", "GeneTrackFromTxDb", "GroupFeatureTrack", "LineTrack", "PinTrack", "track-constructors", "TxTrackFromGRanges", "TxTrackFromTxDb", "VlineTrack" ] }, { "page": "trackdata", "title": "Access Track Data", "topics": [ "$,TnTTrack-method", "$<-,TnTTrack-method", "trackData", "trackdata", "trackData<-" ] }, { "page": "tracklist", "title": "Track List in TnTBoard", "topics": [ "tracklist", "tracklist<-" ] }, { "page": "trackSpec", "title": "Track Spec", "topics": [ "trackSpec", "trackSpec<-" ] }, { "page": "trackWidget", "title": "Convert a TnTBoard to htmlwidget", "topics": [ "trackWidget" ] } ], "_readme": "https://github.com/bioc/TnT/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "Biobase", "BiocGenerics", "bslib", "cachem", "cli", "curl", "data.table", "digest", "evaluate", "fastmap", "fontawesome", "fs", "generics", "GenomeInfoDb", "GenomicRanges", "highr", "htmltools", "htmlwidgets", "httr", "IRanges", "jquerylib", "jsonlite", "knitr", "lifecycle", "memoise", "mime", "openssl", "R6", "rappdirs", "rlang", "rmarkdown", "S4Vectors", "sass", "Seqinfo", "sys", "tinytex", "UCSC.utils", "xfun", "yaml" ], "_vignettes": [ { "source": "introduction.Rmd", "filename": "introduction.html", "title": "Introduction to TnT", "author": "Jialin Ma", "engine": "knitr::rmarkdown", "headings": [ "Motivation", "Install", "Track Constructors", "Track Manipulation", "TnTBoard and TnTGenome" ], "created": "2017-08-23 17:15:59", "modified": "2018-08-30 17:57:44", "commits": 8 } ], "_score": 7.232996110392154, "_indexed": true, "_nocasepkg": "tnt", "_universes": [ "bioc", "marlin-na" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.35.0", "date": "2026-05-30T10:13:04.000Z", "distro": "noble", "commit": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "fileid": "5f24dd83707893a19b86ae6cee3a88a4bfe9071369a6108d3d3af0849469ce6f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107" }, { "r": "4.6.0", "os": "linux", "version": "1.35.0", "date": "2026-05-30T10:12:25.000Z", "distro": "noble", "commit": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "fileid": "378c6b5b2acd25a870d7cb4fe1e77724b472d5471909e08183554f40ee823050", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107" }, { "r": "4.5.3", "os": "mac", "version": "1.35.0", "date": "2026-05-30T14:13:39.000Z", "commit": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "fileid": "cca71b9e8d3c8fdf36b46b640913a9545eb366154c9cd7ec70b94f88819631f0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107" }, { "r": "4.6.0", "os": "mac", "version": "1.35.0", "date": "2026-05-30T14:13:44.000Z", "commit": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "fileid": "aec1170e84fcbdd7bd5c69af8fbc33ef3b0d4aeea632c1565f576afb416fe50c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107" }, { "r": "4.6.0", "os": "wasm", "version": "1.35.0", "date": "2026-05-30T10:12:18.000Z", "commit": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "fileid": "2949c702c189284472d18b0cb1d33c255011053db2569e4a6ca8f603b142fac9", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107" }, { "r": "4.7.0", "os": "win", "version": "1.35.0", "date": "2026-05-30T10:11:21.000Z", "commit": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "fileid": "ee46ab387e682ae7809b73da193e96bb25c3213319e082f3360853ead794e824", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107" }, { "r": "4.5.3", "os": "win", "version": "1.35.0", "date": "2026-05-30T10:11:11.000Z", "commit": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "fileid": "b95d1a5811fc9e95bb3f6c53d371aef7e5b3e2154deb160252f809195955e245", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107" }, { "r": "4.6.0", "os": "win", "version": "1.35.0", "date": "2026-05-30T10:11:16.000Z", "commit": "42cb7649e25bf8a29a67b0bb4739f5f80589b656", "fileid": "eae96b73fb51ebfe8a3f5b4f01f76da4885520e6747ef40e5d53bcad9732e628", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676577107" } ] }