Package: TDbasedUFE 1.13.1

Y-h. Taguchi

TDbasedUFE: Tensor Decomposition Based Unsupervised Feature Extraction

This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.

Authors:Y-h. Taguchi [aut, cre]

TDbasedUFE_1.13.1.tar.gz
TDbasedUFE_1.13.1.zip(r-4.7-any)TDbasedUFE_1.13.1.zip(r-4.6-any)TDbasedUFE_1.13.1.zip(r-4.5-any)
TDbasedUFE_1.13.1.tgz(r-4.6-any)TDbasedUFE_1.13.1.tgz(r-4.5-any)
TDbasedUFE_1.13.1.tar.gz(r-4.7-any)TDbasedUFE_1.13.1.tar.gz(r-4.6-any)
TDbasedUFE_1.13.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TDbasedUFE/json (API)

# Install 'TDbasedUFE' in R:
install.packages('TDbasedUFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tagtag/tdbasedufe/issues

On BioConductor:TDbasedUFE-1.13.1(bioc 3.24)TDbasedUFE-1.12.0(bioc 3.23)

geneexpressionfeatureextractionmethylationarraysinglecellbioinformaticsdna-methylationgene-expression-profileshistone-modificationsmultiomicstensor-decomposition

6.00 score 5 stars 1 packages 22 scripts 369 downloads 11 exports 38 dependencies

Last updated from:9b5d240198. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE148
linux-develOK204
source / vignettesOK195
linux-releaseOK187
macos-releaseOK174
macos-oldrelOK127
windows-develOK127
windows-releaseOK123
windows-oldrelOK106
wasm-releaseOK100

Exports:computeHosvdcomputeHosvdSqureconvertSquarePrepareSummarizedExperimentTensorPrepareSummarizedExperimentTensorSquareselectFeatureselectFeatureSquareselectSingularValueVectorLargeselectSingularValueVectorSmalltableFeaturestableFeaturesSquare

Dependencies:base64encBiocGenericsbslibcachemclicommonmarkdigestfastmapfontawesomefsgenericsGenomicRangesgluehtmltoolshttpuvIRangesjquerylibjsonlitelaterlifecyclemagrittrmemoisemimeMOFAdataotelpromisesR6rappdirsRcpprlangrTensorS4VectorssassSeqinfoshinysourcetoolswithrxtable

QuickStart
Installation | Introduction | Data Analyses | Gene expression. | Multiomics data analysis | Conclusion
Rendered fromQuickStart.Rmdusingknitr::rmarkdown

Last update: 2026-10-01
Started: 2023-01-21

TDbasedUFE
Installation | Introduction | What are tensor and tensor decomposition? | Tensor decomposition based unsupervised feature extraction. | Optimization of standard deviation | Multiomics data analysis | Conclusions
Rendered fromTDbasedUFE.Rmdusingknitr::rmarkdown

Last update: 2023-03-19
Started: 2023-01-20