Introduction | Installation | A stash for Spectra objects | Creating self-contained stashes | Stashes for Spectra with in-memory backends | Stashes for additional MsBackend implementations | Session information
Package: SpectraStash 0.99.7
Johannes Rainer
SpectraStash: Serialize and restore Spectra objects in interoperable file formats
The serialization mechanism of R allows to save and load R data objects in a binary format, that can however not be read by other programming languages or software. The SpectraStash package implements the serialization methods from the MsStash package for Spectra objects and its MsBackend classes. A variety of different file formats and types, including HDF5 and JSON-based formats defined by the Bioconductor *alabaster* package are supported. The file type can be defined and configured through a second argument `param` of the save/read methods.
Authors:
SpectraStash_0.99.7.tar.gz
SpectraStash_0.99.7.zip(r-4.7-any)SpectraStash_0.99.7.zip(r-4.6-any)SpectraStash_0.99.7.zip(r-4.5-any)
SpectraStash_0.99.7.tgz(r-4.6-any)SpectraStash_0.99.7.tgz(r-4.5-any)
SpectraStash_0.99.7.tar.gz(r-4.7-any)SpectraStash_0.99.7.tar.gz(r-4.6-any)
SpectraStash_0.99.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SpectraStash/json (API)
| # Install 'SpectraStash' in R: |
| install.packages('SpectraStash', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rformassspectrometry/spectrastash/issues
On BioConductor:SpectraStash-0.99.6(bioc 3.24)
infrastructuremassspectrometrymetabolomicsdataimportproteomics
Last updated from:fcbd007cb5. Checks:1 NOTE, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 164 | ||
| linux-devel | OK | 531 | ||
| source / vignettes | OK | 331 | ||
| linux-release | OK | 479 | ||
| macos-release | OK | 427 | ||
| macos-oldrel | OK | 421 | ||
| windows-devel | OK | 590 | ||
| windows-release | OK | 563 | ||
| windows-oldrel | OK | 551 | ||
| wasm-release | OK | 134 |
Exports:saveMsObjectsaveObject
Dependencies:alabaster.basealabaster.schemasassortheadBHBiocGenericsbiocmakeBiocParallelclueclustercodetoolscpp11curldata.tabledir.expiryfilelockformatRfsfutile.loggerfutile.optionsgenericsIRangesjsonlitejsonvalidatelambda.rMASSMetaboCoreUtilsMsCoreUtilsMsStashProtGenericsR6Rcpprhdf5rhdf5filtersRhdf5libS4VectorssnowSpectraV8
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Stash for 'MsBackendCached' | MsBackendCachedStash readMsObject,MsBackendCached,AlabasterParam-method readMsObject,MsBackendCached,PlainTextParam-method saveMsObject,MsBackendCached,AlabasterParam-method saveMsObject,MsBackendCached,PlainTextParam-method saveObject,MsBackendCached-method |
| MsBackendHdf5Peaks Stash | MsBackendHdf5PeaksStash readMsObject,MsBackendHdf5Peaks,AlabasterParam-method readMsObject,MsBackendHdf5Peaks,PlainTextParam-method saveMsObject,MsBackendHdf5Peaks,AlabasterParam-method saveMsObject,MsBackendHdf5Peaks,PlainTextParam-method saveObject,MsBackendHdf5Peaks-method |
| Stash for 'MsBackendMemory' and 'MsBackendDataFrame' | MsBackendMemoryStash readMsObject,MsBackendInMemory,AlabasterParam-method readMsObject,MsBackendInMemory,PlainTextParam-method saveMsObject,MsBackendInMemory,AlabasterParam-method saveMsObject,MsBackendInMemory,PlainTextParam-method saveObject,MsBackendInMemory-method |
| Stash for backends for data from public repositories | MsBackendMetaboLightsStash readMsObject,MsBackendMetaboLights,AlabasterParam-method saveMsObject,MsBackendMetaboLights,AlabasterParam-method saveObject,MsBackendMetaboLights-method |
| MsBackendMzR Stash | MsBackendMzRStash readMsObject,MsBackendMzR,AlabasterParam-method readMsObject,MsBackendMzR,PlainTextParam-method saveMsObject,MsBackendMzR,AlabasterParam-method saveMsObject,MsBackendMzR,PlainTextParam-method saveObject,MsBackendMzR-method |
| Stash for SQL-based backends | MsBackendSqlStash readMsObject,MsBackendOfflineSql,AlabasterParam-method readMsObject,MsBackendOfflineSql,PlainTextParam-method readMsObject,MsBackendSql,AlabasterParam-method readMsObject,MsBackendSql,PlainTextParam-method saveMsObject,MsBackendOfflineSql,AlabasterParam-method saveMsObject,MsBackendOfflineSql,PlainTextParam-method saveMsObject,MsBackendSql,AlabasterParam-method saveMsObject,MsBackendSql,PlainTextParam-method saveObject,MsBackendOfflineSql-method saveObject,MsBackendSql-method |
| Spectra Stash | readMsObject,Spectra,AlabasterParam-method readMsObject,Spectra,PlainTextParam-method saveMsObject,Spectra,AlabasterParam-method saveMsObject,Spectra,PlainTextParam-method saveObject,Spectra-method SpectraStash |