Introduction | Installation | Datasets | Load data | Load using named accessors | Keren et al. (2018) | Ferguson et al. (2022) | Ferguson Images | Ferguson SpatialExperiment Object | Schurch et al. (2020) | Ali et al. (2020) | Amancherla et al. (2025) | Vannan et al. (2025) | Generating objects from raw data files | Session information
Package: SpatialDatasets 1.11.0
Ellis Patrick
SpatialDatasets: Collection of spatial omics datasets
This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.
Authors:
SpatialDatasets_1.11.0.tar.gz
SpatialDatasets_1.11.0.tar.gz(r-4.7-any)SpatialDatasets_1.11.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SpatialDatasets/json (API)
| # Install 'SpatialDatasets' in R: |
| install.packages('SpatialDatasets', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sydneybiox/spatialdatasets/issues
On BioConductor:SpatialDatasets-1.11.0(data/experiment 3.24)SpatialDatasets-1.10.0(data/experiment 3.23)
experimentdataexperimenthubreproducibleresearchsinglecelldataspatialdatahomo_sapiens_datamus_musculus_datadatapkg
Last updated from:7861da234c. Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 197 | ||
| linux-devel | WARNING | 335 | ||
| source / vignettes | OK | 1120 | ||
| linux-release | WARNING | 399 |
Exports:Ferguson_ImagesfergusonClinicalspe_Ali_2020spe_Amancherla_2025spe_Ferguson_2022spe_Keren_2018spe_Schurch_2020spe_Vannan_2025
Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrExperimentHubfastmapfilelockgenericsGenomicRangesgluehttrhttr2IRangesjsonliteKEGGRESTlatticelifecyclemagickmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsRcpprjsonrlangRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A collection of publically available spatial omics datasets. | Ferguson_Images SpatialDatasets spe_Ali_2020 spe_Ferguson_2022 spe_Keren_2018 spe_Schurch_2020 |