Package: SpatialData.data 0.99.10
SpatialData.data: SpatialData datasets
A companion package to access scverse-curated example SpatialData stores. The datasets span spatial omics technologies such as Visium, Visium HD, Xenium, MERFISH, MIBI-TOF, and imaging mass cytometry, and are distributed as zipped Zarr stores through the Bioconductor bucket on the NSF Open Storage Network (OSN) or the scverse spatialdata sandbox. Available datasets and their metadata can be listed, and each dataset is downloaded once, cached locally with 'BiocFileCache', and read into R as a SpatialData object via 'spatialdataR' package.
Authors:
SpatialData.data_0.99.10.tar.gz
SpatialData.data_0.99.10.zip(r-4.7-any)SpatialData.data_0.99.10.zip(r-4.6-any)SpatialData.data_0.99.10.zip(r-4.5-any)
SpatialData.data_0.99.10.tgz(r-4.6-any)SpatialData.data_0.99.10.tgz(r-4.5-any)
SpatialData.data_0.99.10.tar.gz(r-4.7-any)SpatialData.data_0.99.10.tar.gz(r-4.6-any)
SpatialData.data_0.99.10.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SpatialData.data/json (API)
| # Install 'SpatialData.data' in R: |
| install.packages('SpatialData.data', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/helenalc/spatialdata.data/issues
Pkgdown/docs site:https://helenalc.github.io
dataimportdatarepresentationinfrastructureimmunooncologygeneexpressiontranscriptomicssinglecellspatial
Last updated from:273178bc92. Checks:1 NOTE, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 230 | ||
| linux-devel | OK | 389 | ||
| source / vignettes | OK | 516 | ||
| linux-release | OK | 545 | ||
| macos-release | OK | 181 | ||
| macos-oldrel | OK | 185 | ||
| windows-devel | OK | 201 | ||
| windows-release | OK | 312 | ||
| windows-oldrel | OK | 238 | ||
| wasm-release | OK | 155 |
Exports:SD.data_availableSD.data_listSD.data_load
Dependencies:abindanndataRarrowaskpassassertthatbase64encBHBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemclassclassIntclicpp11curlDBIdbplyrDelayedArraydigestdplyrduckdbduckspatiale1071fastmapfilelockgenericsGenomicRangesgeoarrowgluegraphgrumpyherehttr2IRangesjsonliteKernSmoothlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisenanoarrowopensslpaws.commonpaws.storagepillarpkgconfigpngproxypurrrR.methodsS3R.ooR.utilsR6rappdirsRarrRBGLRcppRcppTOMLreticulaterlangrprojrootRSQLites2S4ArraysS4VectorsSeqinfosfSingleCellExperimentSparseArrayspatialdataRstringistringrSummarizedExperimentsystibbletidyrtidyselectunitsutf8uuidvctrswithrwkxml2XVectorZarrArray
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| SD.data_available | SD.data_available |
| SD.data_list | SD.data_list |
| retrieve scverse-curated `SpatialData` .zarr archive | SD.data_load |