SomaticCancerAlterations | Table of Contents | 1 Motivation | 2 Data Sets | 3 Exploring Mutational Data | 4 Exploring Multiple Studies | 5 Data Provenance | 6 Alternatives | 7 Session Info | Footnotes:
Package: SomaticCancerAlterations 1.49.0
Julian Gehring
SomaticCancerAlterations: Somatic Cancer Alterations
Collection of somatic cancer alteration datasets
Authors:
SomaticCancerAlterations_1.49.0.tar.gz
SomaticCancerAlterations_1.49.0.tar.gz(r-4.7-any)SomaticCancerAlterations_1.49.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SomaticCancerAlterations/json (API)
| # Install 'SomaticCancerAlterations' in R: |
| install.packages('SomaticCancerAlterations', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- gbm_tcga - Somatic Cancer Alterations Data Sets
- hnsc_tcga - Somatic Cancer Alterations Data Sets
- kirc_tcga - Somatic Cancer Alterations Data Sets
- luad_tcga - Somatic Cancer Alterations Data Sets
- lusc_tcga - Somatic Cancer Alterations Data Sets
- meta - Somatic Cancer Alterations Data Sets
- ov_tcga - Somatic Cancer Alterations Data Sets
- skcm_tcga - Somatic Cancer Alterations Data Sets
- thca_tcga - Somatic Cancer Alterations Data Sets
On BioConductor:SomaticCancerAlterations-1.49.0(data/experiment 3.24)SomaticCancerAlterations-1.48.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatagenomecancerdataproject1000genomesncidatapkg
Last updated from:c6f9711623. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 160 | ||
| linux-devel | NOTE | 252 | ||
| source / vignettes | OK | 295 | ||
| linux-release | NOTE | 238 |
Exports:hg2ncbincbi2hgscaListDatasetsscaLoadDatasetsscaMetadataseqchr
Dependencies:BiocGenericsgenericsGenomicRangesIRangesS4VectorsSeqinfo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Somatic Cancer Alterations | SomaticCancerAlterations-package SomaticCancerAlterations |
| Somatic Cancer Alterations Data Sets | blca_tcga cesc_tcga gbm_tcga hnsc_tcga kirc_tcga lgg_tcga luad_tcga lusc_tcga meta ov_tcga paad_tcga prad_tcga skcm_tcga SomaticCancerAlterations-data stad_tcga thca_tcga ucec_tcga |
| SomaticCancerAlterations functions | scaListDatasets scaLoadDatasets scaMetadata SomaticCancerAlterations-functions |
| SomaticCancerAlterations helper functions | hg2ncbi ncbi2hg seqchr SomaticCancerAlterations-helper-functions |