Package: SingleRBook 1.23.0
Aaron Lun
SingleRBook: The Book of SingleR
Comprehensive guide to using the SingleR Bioconductor package (https://bioconductor.org/packages/SingleR) for automated cell annotation in single-cell RNA-seq datasets. Includes theoretical explanations, worked examples with code, and demonstrations of advanced functionality.
Authors:
SingleRBook_1.23.0.tar.gz
SingleRBook_1.23.0.tar.gz(r-4.7-any)SingleRBook_1.23.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SingleRBook/json (API)
| # Install 'SingleRBook' in R: |
| install.packages('SingleRBook', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ltla/singlerbook/issues
On BioConductor:SingleRBook-1.23.0(books 3.24)SingleRBook-1.22.0(books 3.23)
immunooncologyworkflowworkflowsinglecellworkflowbioconductorsinglerdatapkg
Last updated from:adaf2123a2. Checks:3 WARNING, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 226 | ||
| linux-devel | WARNING | 338 | ||
| source / vignettes | OK | 1055 | ||
| linux-release | WARNING | 376 |
Exports:
Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.scealabaster.schemasalabaster.seAnnotationDbiAnnotationFilterAnnotationHubaskpassassortheadbase64encbasiliskbeachmatbeeswarmBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakeBiocManagerBiocNeighborsBiocParallelBiocSingularBiocStyleBiocVersionBiostringsbitbit64bitopsblobblusterbookdownbslibcachemcelldexcigarillocliclusterCodeDependscodetoolscommonmarkcorocpp11crayoncrosstalkcurlDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdir.expirydplyrdqrngDTedgeRellmerensembldbevaluateExperimentHubfarverfastmapfilelockFNNfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggbeeswarmggplot2ggrepelgluegraphgridExtragtablegypsumh5mreadHDF5Arrayherehighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphIRangesirlbaisobandjquerylibjsonlitejsonvalidateKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmamagrittrMatrixMatrixGenericsmatrixStatsmemoisemetapodmimeontologyIndexontologyPlotontoProcopensslotelpaintmappheatmappillarpkgconfigpngpromisesProtGenericspurrrR.methodsS3R.ooR.utilsR6rappdirsRBGLRColorBrewerRcppRcppAnnoyRcppEigenRcppMLRcppProgressRcppTOMLRCurlrebookrestfulrreticulateRgraphvizrhdf5rhdf5filtersRhdf5libRhtslibRigraphlibrjsonrlangrmarkdownrprojrootRsamtoolsRSpectraRSQLitersvdrtracklayerRtsneS4ArraysS4VectorsS7sassScaledMatrixscalesscaterscranscrapperscRNAseqscuttleSeqinfoshinySingleCellExperimentSingleRsitmosnowsourcetoolsSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsysTENxPBMCDatatibbletidyrtidyselecttinytexUCSC.utilsutf8uwotV8vctrsviporviridisviridisLitewithrxfunXMLxtableXVectoryaml
Readme and manuals
Help Manual
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