Package: SingleMoleculeFootprintingData 1.21.0

Guido Barzaghi

SingleMoleculeFootprintingData: Data supporting the SingleMoleculeFootprinting pkg

This Data package contains data objcets relevanat for the SingleMoleculeFootprinting package. More specifically, it contains one example of aligned sequencing data (.bam & .bai) necessary to run the SingleMoleculeFootprinting vignette. Additionally, we provide data that are essential for some functions to work correctly such as BaitCapture() and SampleCorrelation().

Authors:Guido Barzaghi [aut, cre], Arnaud Krebs [aut], Mike Smith [ctb]

SingleMoleculeFootprintingData_1.21.0.tar.gz
SingleMoleculeFootprintingData_1.21.0.tar.gz(r-4.7-any)SingleMoleculeFootprintingData_1.21.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SingleMoleculeFootprintingData/json (API)

# Install 'SingleMoleculeFootprintingData' in R:

install.packages('SingleMoleculeFootprintingData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:SingleMoleculeFootprintingData-1.21.0(data/experiment 3.24)SingleMoleculeFootprintingData-1.20.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimenthub experimentdata sequencingdata datapkg

4.00 score 1 scripts 5 exports 57 dependencies

Last updated from:cfcbcd29c6. Checks:3 NOTE, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	139
linux-devel	NOTE	264
source / vignettes	OK	212
linux-release	NOTE	222

Exports:AllCs.rds EnrichmentRegions_mm10.rds NRF1pair.bam NRF1pair.bam.bai ReferenceMethylation.rds

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

SingleMoleculeFootprintingData

Rendered fromSingleMoleculeFootprintingData.Rmdusingknitr::rmarkdown

Last update: 2021-05-05
Started: 2021-03-17

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Development and contributors

Readme and manuals

Help Manual

Help page	Topics
SingleMoleculeFootprintingData	AllCs.rds EnrichmentRegions_mm10.rds NRF1pair.bam NRF1pair.bam.bai ReferenceMethylation.rds