Package: SimBenchData 1.21.0

Yue Cao

SimBenchData: SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

The SimBenchData package contains a total of 35 single-cell RNA-seq datasets covering a wide range of data characteristics, including major sequencing protocols, multiple tissue types, and both human and mouse sources.

Authors:Yue Cao [aut, cre], Pengyi Yang [aut], Jean Yee Hwa Yang [aut]

SimBenchData_1.21.0.tar.gz
SimBenchData_1.21.0.tar.gz(r-4.7-any)SimBenchData_1.21.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SimBenchData/json (API)

# Install 'SimBenchData' in R:

install.packages('SimBenchData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:SimBenchData-1.21.0(data/experiment 3.24)SimBenchData-1.20.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimenthub experimentdata singlecelldata rnaseqdata tissue sequencingdata datapkg

3.30 score 4 scripts 2 exports 57 dependencies

Last updated from:dd890bf367. Checks:3 NOTE, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	171
linux-devel	NOTE	268
source / vignettes	OK	236
linux-release	NOTE	243

Exports:showAdditionalDetail showMetaData

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Introduction | The SimBenchData dataset | Session info

Rendered fromSimBenchData-vignette.Rmdusingknitr::rmarkdown

Last update: 2021-03-05
Started: 2021-03-05

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Additional details on 35 datasets	showAdditionalDetail
Metadata of the 35 datasets	showMetaData