Package: ScaledMatrix 1.15.0

Aaron Lun

ScaledMatrix: Creating a DelayedMatrix of Scaled and Centered Values

Provides delayed computation of a matrix of scaled and centered values. The result is equivalent to using the scale() function but avoids explicit realization of a dense matrix during block processing. This permits greater efficiency in common operations, most notably matrix multiplication.

Authors:Aaron Lun [aut, cre, cph]

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ScaledMatrix.pdf |ScaledMatrix.html✨
ScaledMatrix/json (API)

# Install 'ScaledMatrix' in R:
install.packages('ScaledMatrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ltla/scaledmatrix/issues

On BioConductor:ScaledMatrix-1.15.0(bioc 3.21)ScaledMatrix-1.14.0(bioc 3.20)

softwaredatarepresentation

7.75 score 100 packages 8 scripts 21k downloads 10 exports 15 dependencies

Last updated 2 months agofrom:5ea7d67ff2. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 14 2024
R-4.5-winNOTEDec 14 2024
R-4.5-linuxNOTEDec 14 2024
R-4.4-winOKDec 14 2024
R-4.4-macOKDec 14 2024
R-4.3-winOKDec 14 2024
R-4.3-macOKDec 14 2024

Exports:colMeanscolSumsDelayedArrayextract_arrayrowMeansrowSumsScaledMatrixScaledMatrixSeedshowt

Dependencies:abindBiocGenericscrayonDelayedArraygenericsIRangeslatticeMatrixMatrixGenericsmatrixStatsS4ArraysS4VectorsSparseArrayXVectorzlibbioc

Using the ScaledMatrix class

Aaron Lun

Rendered fromScaledMatrix.Rmdusingknitr::rmarkdownon Dec 14 2024.

Last update: 2023-05-03
Started: 2020-12-13

Readme and manuals

Help Manual

Help pageTopics
The ScaledMatrix class%*%,ANY,ScaledMatrix-method %*%,ScaledMatrix,ANY-method %*%,ScaledMatrix,ScaledMatrix-method colMeans,ScaledMatrix-method colSums,ScaledMatrix-method crossprod,ANY,ScaledMatrix-method crossprod,ScaledMatrix,ANY-method crossprod,ScaledMatrix,missing-method crossprod,ScaledMatrix,ScaledMatrix-method DelayedArray,ScaledMatrixSeed-method dim,ScaledMatrixSeed-method dimnames,ScaledMatrixSeed-method dimnames<-,ScaledMatrix,ANY-method extract_array,ScaledMatrixSeed-method rowMeans,ScaledMatrix-method rowSums,ScaledMatrix-method ScaledMatrix ScaledMatrix-class ScaledMatrixSeed ScaledMatrixSeed-class show,ScaledMatrixSeed-method t,ScaledMatrix-method tcrossprod,ANY,ScaledMatrix-method tcrossprod,ScaledMatrix,ANY-method tcrossprod,ScaledMatrix,missing-method tcrossprod,ScaledMatrix,ScaledMatrix-method [,ScaledMatrix,ANY,ANY,ANY-method