Package: SUITOR 1.9.0

Bill Wheeler

SUITOR: Selecting the number of mutational signatures through cross-validation

An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.

Authors:DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]

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SUITOR.pdf |SUITOR.html✨
SUITOR/json (API)
NEWS

# Install 'SUITOR' in R:

install.packages('SUITOR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wheelerb/suitor/issues

Datasets:

SimData - Data for examples
plotData - Example data for plotting
results - Suitor return object

On BioConductor:SUITOR-1.9.0(bioc 3.21)SUITOR-1.8.0(bioc 3.20)

genetics software somaticmutation

4.00 score 2 scripts 121 downloads 4 exports 37 dependencies

Last updated 2 months agofrom:293c905077. Checks:OK: 5 WARNING: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 30 2024
R-4.5-win-x86_64	OK	Nov 30 2024
R-4.5-linux-x86_64	OK	Nov 30 2024
R-4.4-win-x86_64	OK	Nov 30 2024
R-4.4-mac-x86_64	WARNING	Nov 30 2024
R-4.4-mac-aarch64	WARNING	Nov 30 2024
R-4.3-win-x86_64	OK	Nov 30 2024
R-4.3-mac-x86_64	WARNING	Nov 30 2024
R-4.3-mac-aarch64	WARNING	Nov 30 2024

Exports:getSummary plotErrors suitor suitorExtractWH

Dependencies:BH BiocParallel cli codetools colorspace cpp11 fansi farver formatR futile.logger futile.options ggplot2 glue gtable isoband labeling lambda.r lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer rlang scales snow tibble utf8 vctrs viridisLite withr

SUITOR: selecting the number of mutational signatures

DongHyuk Lee and Bin Zhu

Rendered fromvignette.Rmdusingknitr::rmarkdownon Nov 30 2024.

Last update: 2022-05-10
Started: 2022-04-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Number of mutational signatures	SUITOR
Compute summary results	getSummary
Example data for plotting	plotData
Plot train and test errors	plotErrors
suitor return object	results
Data for examples	SimData
suitor	suitor
suitorExtractWH	suitorExtractWH