Introduction | Installing the SUITOR package from Bioconductor | Loading the package | Example data | Selecting the number of mutational signatures | Input data | Options | Running suitor() | Extracting the signature profiles and activities | Summarizing signature profiles with MutationalPatterns | Session Information
Package: SUITOR 1.15.0
Bill Wheeler
SUITOR: Selecting the number of mutational signatures through cross-validation
An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.
Authors:
SUITOR_1.15.0.tar.gz
SUITOR_1.15.0.zip(r-4.7)SUITOR_1.15.0.zip(r-4.6)SUITOR_1.15.0.zip(r-4.5)
SUITOR_1.15.0.tgz(r-4.6-x86_64)SUITOR_1.15.0.tgz(r-4.6-arm64)SUITOR_1.15.0.tgz(r-4.5-x86_64)
SUITOR_1.15.0.tar.gz(r-4.7-arm64)SUITOR_1.15.0.tar.gz(r-4.7-x86_64)SUITOR_1.15.0.tar.gz(r-4.6-arm64)SUITOR_1.15.0.tar.gz(r-4.6-x86_64)
SUITOR_1.15.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SUITOR/json (API)
| # Install 'SUITOR' in R: |
| install.packages('SUITOR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wheelerb/suitor/issues
Datasets:
On BioConductor:SUITOR-1.15.0(bioc 3.24)SUITOR-1.14.0(bioc 3.23)
geneticssoftwaresomaticmutation
Last updated from:d324c91d52. Checks:4 WARNING, 9 OK, 1 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 192 | ||
| linux-devel-arm64 | OK | 189 | ||
| linux-devel-x86_64 | OK | 211 | ||
| source / vignettes | OK | 329 | ||
| linux-release-arm64 | OK | 188 | ||
| linux-release-x86_64 | OK | 238 | ||
| macos-release-arm64 | WARNING | 120 | ||
| macos-release-x86_64 | WARNING | 240 | ||
| macos-oldrel-arm64 | FAIL | 126 | ||
| macos-oldrel-x86_64 | WARNING | 219 | ||
| windows-devel | OK | 135 | ||
| windows-release | OK | 175 | ||
| windows-oldrel | OK | 150 | ||
| wasm-release | OK | 175 |
Exports:getSummaryplotErrorssuitorsuitorExtractWH
Dependencies:BHBiocParallelclicodetoolscpp11farverformatRfutile.loggerfutile.optionsggplot2gluegtableisobandlabelinglambda.rlifecycleR6RColorBrewerrlangS7scalessnowvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Number of mutational signatures | SUITOR |
| Compute summary results | getSummary |
| Example data for plotting | plotData |
| Plot train and test errors | plotErrors |
| suitor return object | results |
| Data for examples | SimData |
| suitor | suitor |
| suitorExtractWH | suitorExtractWH |
