{
  "_id": "6ab1cc9c3d719c1f84088bfb",
  "Package": "SUITOR",
  "Title": "Selecting the number of mutational signatures through\ncross-validation",
  "Version": "1.15.2",
  "Date": "2026-09-21",
  "Authors@R": "c(person(given=\"DongHyuk\", family=\"Lee\", role=\"aut\", email=\"dhyuklee@pusan.ac.kr\"),\nperson(given=\"Bin\", family=\"Zhu\", role=\"aut\", email=\"bin.zhu@nih.gov\"),\nperson(given=\"Bill\", family=\"Wheeler\", role=\"cre\", email=\"wheelerb@imsweb.com\"))",
  "Description": "An unsupervised cross-validation method to select the\noptimal number of mutational signatures. A data set of\nmutational counts is split into training and validation\ndata.Signatures are estimated in the training data and then\nused to predict the mutations in the validation data.",
  "License": "GPL-2",
  "biocViews": "Genetics, Software, SomaticMutation",
  "NeedsCompilation": "yes",
  "BugReports": "https://github.com/wheelerb/SUITOR/issues",
  "VignetteBuilder": "knitr",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-09-21 17:25:57 UTC",
  "RemoteUrl": "https://github.com/bioc/SUITOR",
  "RemoteRef": "HEAD",
  "RemoteSha": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
  "Packaged": {
    "Date": "2026-09-22 00:23:49 UTC",
    "User": "root"
  },
  "Author": "DongHyuk Lee [aut],\nBin Zhu [aut],\nBill Wheeler [cre]",
  "Maintainer": "Bill Wheeler <wheelerb@imsweb.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "SUITOR_1.15.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/09201dea3dc3065469fade2656b57edc68e692d29e961f41e6dbc6f071205597",
  "_filesize": 335908,
  "_sha256": "09201dea3dc3065469fade2656b57edc68e692d29e961f41e6dbc6f071205597",
  "_expires": "2026-12-31T00:32:25.000Z",
  "_created": "2026-09-22T00:23:49.000Z",
  "_published": "2026-09-22T00:32:28.119Z",
  "_bioccheck": {
    "error": 0,
    "warning": 2,
    "note": 8
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042",
  "_status": "success",
  "_upstream": "https://github.com/bioc/SUITOR",
  "_commit": {
    "id": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
    "author": "wheelerb <wheelerb@imsweb.com>",
    "committer": "wheelerb <wheelerb@imsweb.com>",
    "message": "new souce file\n",
    "time": 1790011557
  },
  "_maintainer": {
    "name": "Bill Wheeler",
    "email": "wheelerb@imsweb.com",
    "login": "wheelerb",
    "description": "",
    "uuid": 33498685
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 106569698920,
      "time": 187,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "10671746022"
    },
    {
      "job": 106569698852,
      "time": 176,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10671492014"
    },
    {
      "job": 106569698918,
      "time": 252,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10671152432"
    },
    {
      "job": 106569699035,
      "time": 177,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10672025808"
    },
    {
      "job": 106569698922,
      "time": 269,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10671995860"
    },
    {
      "job": 106569698911,
      "time": 116,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10672080648"
    },
    {
      "job": 106569699070,
      "time": 275,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10671372686"
    },
    {
      "job": 106569698901,
      "time": 134,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10671092277"
    },
    {
      "job": 106569698899,
      "time": 300,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10671477299"
    },
    {
      "job": 106568723683,
      "time": 263,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10671870645"
    },
    {
      "job": 106569698842,
      "time": 170,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10670972595"
    },
    {
      "job": 106569698894,
      "time": 235,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10671342259"
    },
    {
      "job": 106569698947,
      "time": 155,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10670992435"
    },
    {
      "job": 106569698984,
      "time": 115,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10671306947"
    },
    {
      "job": 106569698926,
      "time": 272,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10671761104"
    },
    {
      "job": 106569698904,
      "time": 121,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10670997427"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "MutationalPatterns",
      "role": "Suggests"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "BiocManager",
      "role": "Suggests"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-38",
      "n": 1
    },
    {
      "week": "2026-39",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.15.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.14.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "genetics",
    "software",
    "somaticmutation"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "wheelerb",
      "count": 125,
      "uuid": 33498685
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 468,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 325,
    "source": "https://www.bioconductor.org/packages/stats/bioc/SUITOR"
  },
  "_devurl": "https://github.com/wheelerb/suitor",
  "_searchresults": 4,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SUITOR.html"
  ],
  "_homeurl": "https://github.com/wheelerb/suitor",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "getSummary",
    "plotErrors",
    "suitor",
    "suitorExtractWH"
  ],
  "_datasets": [
    {
      "name": "plotData",
      "title": "Example data for plotting",
      "object": "plotData",
      "file": "plotData.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Rank",
        "Type",
        "MSErr"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    },
    {
      "name": "results",
      "title": "suitor return object",
      "object": "results",
      "file": "results.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "SimData",
      "title": "Data for examples",
      "object": "SimData",
      "file": "SimData.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "X1",
        "X2",
        "X3",
        "X4",
        "X5",
        "X6",
        "X7",
        "X8",
        "X9",
        "X10",
        "X11",
        "X12",
        "X13",
        "X14",
        "X15",
        "X16",
        "X17",
        "X18",
        "X19",
        "X20",
        "X21",
        "X22",
        "X23",
        "X24",
        "X25",
        "X26",
        "X27",
        "X28",
        "X29",
        "X30",
        "X31",
        "X32",
        "X33",
        "X34",
        "X35",
        "X36",
        "X37",
        "X38",
        "X39",
        "X40",
        "X41",
        "X42",
        "X43",
        "X44",
        "X45",
        "X46",
        "X47",
        "X48",
        "X49",
        "X50",
        "X51",
        "X52",
        "X53",
        "X54",
        "X55",
        "X56",
        "X57",
        "X58",
        "X59",
        "X60",
        "X61",
        "X62",
        "X63",
        "X64",
        "X65",
        "X66",
        "X67",
        "X68",
        "X69",
        "X70",
        "X71",
        "X72",
        "X73",
        "X74",
        "X75",
        "X76",
        "X77",
        "X78",
        "X79",
        "X80",
        "X81",
        "X82",
        "X83",
        "X84",
        "X85",
        "X86",
        "X87",
        "X88",
        "X89",
        "X90",
        "X91",
        "X92",
        "X93",
        "X94",
        "X95",
        "X96",
        "X97",
        "X98",
        "X99",
        "X100",
        "X101",
        "X102",
        "X103",
        "X104",
        "X105",
        "X106",
        "X107",
        "X108",
        "X109",
        "X110",
        "X111",
        "X112",
        "X113",
        "X114",
        "X115",
        "X116",
        "X117",
        "X118",
        "X119",
        "X120",
        "X121",
        "X122",
        "X123",
        "X124",
        "X125",
        "X126",
        "X127",
        "X128",
        "X129",
        "X130",
        "X131",
        "X132",
        "X133",
        "X134",
        "X135",
        "X136",
        "X137",
        "X138",
        "X139",
        "X140",
        "X141",
        "X142",
        "X143",
        "X144",
        "X145",
        "X146",
        "X147",
        "X148",
        "X149",
        "X150",
        "X151",
        "X152",
        "X153",
        "X154",
        "X155",
        "X156",
        "X157",
        "X158",
        "X159",
        "X160",
        "X161",
        "X162",
        "X163",
        "X164",
        "X165",
        "X166",
        "X167",
        "X168",
        "X169",
        "X170",
        "X171",
        "X172",
        "X173",
        "X174",
        "X175",
        "X176",
        "X177",
        "X178",
        "X179",
        "X180",
        "X181",
        "X182",
        "X183",
        "X184",
        "X185",
        "X186",
        "X187",
        "X188",
        "X189",
        "X190",
        "X191",
        "X192",
        "X193",
        "X194",
        "X195",
        "X196",
        "X197",
        "X198",
        "X199",
        "X200",
        "X201",
        "X202",
        "X203",
        "X204",
        "X205",
        "X206",
        "X207",
        "X208",
        "X209",
        "X210",
        "X211",
        "X212",
        "X213",
        "X214",
        "X215",
        "X216",
        "X217",
        "X218",
        "X219",
        "X220",
        "X221",
        "X222",
        "X223",
        "X224",
        "X225",
        "X226",
        "X227",
        "X228",
        "X229",
        "X230",
        "X231",
        "X232",
        "X233",
        "X234",
        "X235",
        "X236",
        "X237",
        "X238",
        "X239",
        "X240",
        "X241",
        "X242",
        "X243",
        "X244",
        "X245",
        "X246",
        "X247",
        "X248",
        "X249",
        "X250",
        "X251",
        "X252",
        "X253",
        "X254",
        "X255",
        "X256",
        "X257",
        "X258",
        "X259",
        "X260",
        "X261",
        "X262",
        "X263",
        "X264",
        "X265",
        "X266",
        "X267",
        "X268",
        "X269",
        "X270",
        "X271",
        "X272",
        "X273",
        "X274",
        "X275",
        "X276",
        "X277",
        "X278",
        "X279",
        "X280",
        "X281",
        "X282",
        "X283",
        "X284",
        "X285",
        "X286",
        "X287",
        "X288",
        "X289",
        "X290",
        "X291",
        "X292",
        "X293",
        "X294",
        "X295",
        "X296",
        "X297",
        "X298",
        "X299",
        "X300"
      ],
      "rows": 96,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "SUITOR-package",
      "title": "Number of mutational signatures",
      "topics": [
        "SUITOR"
      ]
    },
    {
      "page": "getSummary",
      "title": "Compute summary results",
      "topics": [
        "getSummary"
      ]
    },
    {
      "page": "plotData",
      "title": "Example data for plotting",
      "topics": [
        "plotData"
      ]
    },
    {
      "page": "plotErrors",
      "title": "Plot train and test errors",
      "topics": [
        "plotErrors"
      ]
    },
    {
      "page": "results",
      "title": "suitor return object",
      "topics": [
        "results"
      ]
    },
    {
      "page": "SimData",
      "title": "Data for examples",
      "topics": [
        "SimData"
      ]
    },
    {
      "page": "suitor",
      "title": "suitor",
      "topics": [
        "suitor"
      ]
    },
    {
      "page": "suitorExtractWH",
      "title": "suitorExtractWH",
      "topics": [
        "suitorExtractWH"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/SUITOR/raw/HEAD/README.md",
  "_rundeps": [
    "BH",
    "BiocParallel",
    "cli",
    "codetools",
    "cpp11",
    "farver",
    "formatR",
    "futile.logger",
    "futile.options",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lambda.r",
    "lifecycle",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "snow",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "vignette.Rmd",
      "filename": "vignette.html",
      "title": "SUITOR: selecting the number of mutational signatures",
      "author": "DongHyuk Lee and Bin Zhu",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installing the SUITOR package from Bioconductor",
        "Loading the package",
        "Example data",
        "Selecting the number of mutational signatures",
        "Input data",
        "Options",
        "Running suitor()",
        "Extracting the signature profiles and activities",
        "Summarizing signature profiles with MutationalPatterns",
        "Session Information"
      ],
      "created": "2022-04-18 15:48:38",
      "modified": "2022-05-10 20:19:44",
      "commits": 4
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "suitor",
  "_universes": [
    "bioc",
    "wheelerb"
  ],
  "_previous": "1.15.0",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.15.2",
      "date": "2026-09-22T00:26:42.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/c9523eeadf01d0cb2aa589c6684f45f3aba10c01458d89dbc6405fb4617aff5b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.15.2",
      "date": "2026-09-22T00:27:45.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/71a895457508c7878db444e8e12df1f17df5cee3284c71d3b638f0feecae3da7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.15.2",
      "date": "2026-09-22T00:26:46.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/355a81c74c87ef6c9e210ceb5cf75fdeb8be4372ecd32891881e32e2b76f78dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.15.2",
      "date": "2026-09-22T00:28:05.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/4de3da8b412275e680a1a606e9f0a4106794cdfadecfb441af82a134dae8da14",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.15.2",
      "date": "2026-09-22T00:26:24.000Z",
      "arch": "aarch64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/25827c7367b55540a58aff095dc83ef3307bb09b1571a2b29aca0361a58bb8d0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.15.2",
      "date": "2026-09-22T00:30:54.000Z",
      "arch": "x86_64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/3623ff4fe8c6a853a5a2092c59799bbfb14c5c841cf7d750bb62be55ad2ab7bb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.15.2",
      "date": "2026-09-22T00:26:32.000Z",
      "arch": "aarch64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/43f1f43f851082c4b0ea7a55db33377daa2c07a1989314d91df85c1c3a2328d3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.15.2",
      "date": "2026-09-22T00:28:54.000Z",
      "arch": "x86_64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/650ec03de5773cbf8033184b2705573b08150b2ddc24bda310c27753e6c7a481",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.15.2",
      "date": "2026-09-22T00:27:00.000Z",
      "arch": "emscripten",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/f8d9da3c79f767977d91bfd519a208989a462310d1b3f2e2ee7a86caacb4a9a2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.15.2",
      "date": "2026-09-22T00:27:22.000Z",
      "arch": "aarch64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/91b9d5e8c6b163eaff5c015f238b87f6e1a441e95646f4880d81fb04e73045f7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.15.2",
      "date": "2026-09-22T00:25:19.000Z",
      "arch": "x86_64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/5b5a79105a01613834a812b1c7ba66b7dac4bd47595f9cfcc483c977080ef42e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.15.2",
      "date": "2026-09-22T00:25:20.000Z",
      "arch": "x86_64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/e2ba792a6565c3df521d4b12cdbc7d80fd72e462ad8880c09086cc85ddba99d2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.15.2",
      "date": "2026-09-22T00:27:52.000Z",
      "arch": "aarch64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/2624ac64b28581672a130cb9d5b4eb354ba7dec05d1eb5400586f7a1a4712581",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.15.2",
      "date": "2026-09-22T00:25:24.000Z",
      "arch": "x86_64",
      "commit": "19e9e0bdf29778b6c94d709ecd4776d782ac19c3",
      "fileid": "https://r2.ropensci.org/52e0e3aa861207633bc58a950e1a1ce62c9f3d82f45bd273d9e15bf5d2d12887",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35671465042"
    }
  ]
}