Package: STATegRa 1.41.0
David Gomez-Cabrero
STATegRa: Classes and methods for multi-omics data integration
Classes and tools for multi-omics data integration.
Authors:
STATegRa_1.41.0.tar.gz
STATegRa_1.41.0.zip(r-4.5)STATegRa_1.41.0.zip(r-4.4)STATegRa_1.41.0.zip(r-4.3)
STATegRa_1.41.0.tgz(r-4.4-any)STATegRa_1.41.0.tgz(r-4.3-any)
STATegRa_1.41.0.tar.gz(r-4.5-noble)STATegRa_1.41.0.tar.gz(r-4.4-noble)
STATegRa_1.41.0.tgz(r-4.4-emscripten)STATegRa_1.41.0.tgz(r-4.3-emscripten)
STATegRa.pdf |STATegRa.html✨
STATegRa/json (API)
NEWS
| # Install 'STATegRa' in R: |
| install.packages('STATegRa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Block1 - STATegRa data
- Block1.PCA - STATegRa data
- Block2 - STATegRa data
- Block2.PCA - STATegRa data
- TCGA_BRCA_Data - STATegRa data
- ed - STATegRa data
- ed.PCA - STATegRa data
- mapdata - STATegRa data
On BioConductor:STATegRa-1.41.0(bioc 3.20)STATegRa-1.40.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:9860b009dc
Exports:bioDistbioDistclassbioDistFeaturebioDistFeaturePlotbioDistWbioDistWPlotbioMapcombiningMappingscreateOmicsExpressionSetgetInitialDatagetLoadingsgetMethodInfogetPreprocessinggetScoresgetVAFholistOmicsmodelSelectionomicsCompAnalysisomicsNPCplotResplotVAFSTATegRaUsersGuide
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagerbitopscalibratecaToolsclicodetoolscolorspaceedgeRfansifarverforeachggplot2gluegplotsgridExtragtablegtoolsisobanditeratorsKernSmoothlabelinglatticelifecyclelimmalocfitmagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpreprocessCoreR6RColorBrewerRcpprlangscalesstatmodtibbleutf8vctrsviridisLitewithrzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| bioDist | bioDist bioDist,character,character,bioMap,ExpressionSet,ExpressionSet-method |
| bioDistclass | bioDistclass |
| bioDistFeature | bioDistFeature bioDistFeature,character,list,numeric-method |
| bioDistFeaturePlot | bioDistFeaturePlot |
| bioDistW | bioDistW bioDistW,character,list,matrix-method |
| bioDistWPlot | bioDistWPlot bioDistWPlot,character,list,character-method |
| bioMap | bioMap |
| caClass | caClass-class |
| combiningMappings, combining several mappings for use in the omicsNPC function | combiningMappings |
| createOmicsExpressionSet | createOmicsExpressionSet createOmicsExpressionSet,matrix-method |
| Retrieve initial data from caClass objects | getInitialData getInitialData,caClass-method |
| Retrieve component analysis loadings | getLoadings getLoadings,caClass-method |
| Retrieve information about component analysis method | getMethodInfo getMethodInfo,caClass-method |
| Retrieve information about preprocessing | getPreprocessing getPreprocessing,caClass-method |
| Retrieve component analysis scores | getScores getScores,caClass-method |
| Retrieve information abotut VAF | getVAF getVAF,caClass-method |
| HolistOmics an application of NPC on omics datasets | holistOmics holistOmics,list,character-method |
| Find optimal common and distinctive components | modelSelection modelSelection,list,numeric,character-method |
| Components analysis for multiple objects | omicsCompAnalysis omicsCompAnalysis,list,character,character,numeric,numeric-method |
| omicsNPC, applying the Non-Parametric Combination (NPC) on omics datasets | omicsNPC omicsNPC,list,data.frame-method omicsNPC,list,missing-method |
| Plot component analysis results | plotRes plotRes,caClass,numeric,character,character,logical-method |
| Plot VAF (Variance Explained For) from Component Analysis | plotVAF plotVAF,caClass-method |
| STATegRa | STATegRa-package STATegRa |
| STATegRa data | Block1 Block1.PCA Block2 Block2.PCA ed ed.PCA mapdata STATegRa_data |
| STATegRa data | STATegRa_data_TCGA_BRCA TCGA_BRCA_Data |
| Defunct functions in STATegRa | STATegRa-defunct |
| STATegRaUsersGuide | STATegRaUsersGuide |