Package: SNAGEE 1.53.0
David Venet
SNAGEE: Signal-to-Noise applied to Gene Expression Experiments
Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.
Authors:
SNAGEE_1.53.0.tar.gz
SNAGEE_1.53.0.zip(r-4.7)SNAGEE_1.53.0.zip(r-4.6)SNAGEE_1.53.0.zip(r-4.5)
SNAGEE_1.53.0.tgz(r-4.6-any)SNAGEE_1.53.0.tgz(r-4.5-any)
SNAGEE_1.53.0.tar.gz(r-4.7-any)SNAGEE_1.53.0.tar.gz(r-4.6-any)
SNAGEE_1.53.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SNAGEE/json (API)
| # Install 'SNAGEE' in R: |
| install.packages('SNAGEE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:SNAGEE-1.53.0(bioc 3.24)SNAGEE-1.52.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarrayonechanneltwochannelqualitycontrol
Last updated from:63a71ad56a. Checks:1 ERROR, 6 NOTE, 2 OK, 1 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 142 | ||
| linux-devel-x86_64 | NOTE | 181 | ||
| source / vignettes | OK | 217 | ||
| linux-release-x86_64 | NOTE | 168 | ||
| macos-release-arm64 | NOTE | 117 | ||
| macos-oldrel-arm64 | NOTE | 138 | ||
| windows-devel | NOTE | 467 | ||
| windows-release | WARNING | 912 | ||
| windows-oldrel | NOTE | 476 | ||
| wasm-release | OK | 133 |
Exports:qualSamplequalStudytoSnageeFormat
Dependencies:SNAGEEdata
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Signal-to-Noise Applied to Gene Expression Experiments | SNAGEE-package SNAGEE |
| Quality of samples in a study | qualSample |
| Quality of a study | qualStudy |
| Turns an Eset into a list | toSnageeFormat |
