{ "_id": "6ae5d68495ca2370cc8d1b7e", "Package": "SNAGEE", "Version": "1.53.0", "Date": "2013-07-16", "Title": "Signal-to-Noise applied to Gene Expression Experiments", "Author": "David Venet ", "Maintainer": "David Venet ", "Description": "Signal-to-Noise applied to Gene Expression Experiments.\nSignal-to-noise ratios can be used as a proxy for quality of\ngene expression studies and samples. The SNRs can be calculated\non any gene expression data set as long as gene IDs are\navailable, no access to the raw data files is necessary. This\nallows to flag problematic studies and samples in any public\ndata set.", "License": "Artistic-2.0", "biocViews": "Microarray, OneChannel, TwoChannel, QualityControl", "URL": "http://bioconductor.org/", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:37:03 UTC", "RemoteUrl": "https://github.com/bioc/SNAGEE", "RemoteRef": "HEAD", "RemoteSha": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-31 10:38:03 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "SNAGEE_1.53.0.tar.gz", "_fileid": "https://r2.ropensci.org/d4f6fd3a528f46a8e6deba51ac283d0a50edfef34f394fcfdf78e9ba29a295ee", "_filesize": 159967, "_sha256": "d4f6fd3a528f46a8e6deba51ac283d0a50edfef34f394fcfdf78e9ba29a295ee", "_expires": "2027-02-08T11:52:34.000Z", "_created": "2026-10-31T10:38:03.000Z", "_published": "2026-10-31T11:52:36.070Z", "_upstream": "https://github.com/bioc/SNAGEE", "_status": "success", "_maintainer": { "name": "David Venet", "email": "davenet@ulb.ac.be", "login": "dvenet", "description": "", "uuid": 42641572 }, "_jobs": [ { "job": 124515112857, "time": 159, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "13039708396" }, { "job": 124515112856, "time": 187, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13038979349" }, { "job": 124515112825, "time": 218, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "13039348247" }, { "job": 124515112832, "time": 120, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "13041462489" }, { "job": 124515112884, "time": 145, "config": "macos-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13041268591" }, { "job": 124514369890, "time": 215, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "13039852640" }, { "job": 124515112810, "time": 115, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13039088753" }, { "job": 124515112845, "time": 395, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13039698840" }, { "job": 124515112908, "time": 370, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13039743570" }, { "job": 124515112849, "time": 314, "config": "windows-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13040037452" } ], "_bioccheck": { "error": 1, "warning": 4, "note": 11 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479", "_commit": { "id": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379823 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.6.0", "role": "Depends" }, { "package": "SNAGEEdata", "role": "Depends" }, { "package": "ALL", "role": "Suggests" }, { "package": "hgu95av2.db", "role": "Suggests" }, { "package": "parallel", "role": "Enhances" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.53.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.52.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "microarray", "onechannel", "twochannel", "qualitycontrol" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 480, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 488, "source": "https://www.bioconductor.org/packages/stats/bioc/SNAGEE" }, "_mentions": 1, "_searchresults": 10, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/SNAGEE.html" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "qualSample", "qualStudy", "toSnageeFormat" ], "_help": [ { "page": "SNAGEE-package", "title": "Signal-to-Noise Applied to Gene Expression Experiments", "topics": [ "SNAGEE-package", "SNAGEE" ] }, { "page": "qualSample", "title": "Quality of samples in a study", "topics": [ "qualSample" ] }, { "page": "qualStudy", "title": "Quality of a study", "topics": [ "qualStudy" ] }, { "page": "toSnageeFormat", "title": "Turns an Eset into a list", "topics": [ "toSnageeFormat" ] } ], "_rundeps": [ "SNAGEEdata" ], "_vignettes": [ { "source": "SNAGEE.Rnw", "filename": "SNAGEE.pdf", "title": "SNAGEE Vignette", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:27:45", "modified": "2013-11-01 20:27:45", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "snagee", "_universes": [ "bioc", "dvenet" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.53.0", "date": "2026-10-31T10:41:05.000Z", "distro": "resolute", "commit": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "fileid": "https://r2.ropensci.org/ab182a87545144c4187ac1ab0e14ecb6f99eb55045a4988285efcc41372cc030", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479" }, { "r": "4.6.1", "os": "linux", "version": "1.53.0", "date": "2026-10-31T10:41:38.000Z", "distro": "resolute", "commit": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "fileid": "https://r2.ropensci.org/80dd5435848d86c6093ca1e82c44a96f869645f28cbb9bced9a4abe677e9b7a5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479" }, { "r": "4.5.3", "os": "mac", "version": "1.53.0", "date": "2026-10-31T11:50:59.000Z", "commit": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "fileid": "https://r2.ropensci.org/63840d16d082dc8d9d16ce7bf70fbdf0360e5cf860ce77c3e3e64cc63d289f44", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479" }, { "r": "4.6.2", "os": "mac", "version": "1.53.0", "date": "2026-10-31T11:51:56.000Z", "commit": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "fileid": "https://r2.ropensci.org/db62dbc44ada9d7818fb76b962eb5f3a0eef7657a9873b8f0c0a6ca4e6130aaf", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479" }, { "r": "4.6.0", "os": "wasm", "version": "1.53.0", "date": "2026-10-31T10:40:13.000Z", "commit": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "fileid": "https://r2.ropensci.org/2f85108b78cc99cd913992af4435301b0cd859686e322d6672931d03d24fb464", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479" }, { "r": "4.7.0", "os": "win", "version": "1.53.0", "date": "2026-10-31T10:44:31.000Z", "commit": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "fileid": "https://r2.ropensci.org/71f3cd387948809acbf19346beb35284c6a5d881064f38afd24ee1d0911b4518", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479" }, { "r": "4.5.3", "os": "win", "version": "1.53.0", "date": "2026-10-31T10:44:02.000Z", "commit": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "fileid": "https://r2.ropensci.org/1240438d2b4edf081834cd39ffce19bb50d1b1a13123a13eaa4fa5dc09953162", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479" }, { "r": "4.6.2", "os": "win", "version": "1.53.0", "date": "2026-10-31T10:43:13.000Z", "commit": "63a71ad56a86b8be654d3b9b1303b48da0ff457e", "fileid": "https://r2.ropensci.org/87646d4e0cdb3ad69ce86faca3ee58b1d0032e321a6b3fdb535acdba20f4f309", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41193302479" } ] }