Package: SIMAT 1.37.0
M. R. Nezami Ranjbar
SIMAT: GC-SIM-MS data processing and alaysis tool
This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.
Authors:
SIMAT_1.37.0.tar.gz
SIMAT_1.37.0.zip(r-4.5)SIMAT_1.37.0.zip(r-4.4)SIMAT_1.37.0.zip(r-4.3)
SIMAT_1.37.0.tgz(r-4.4-any)SIMAT_1.37.0.tgz(r-4.3-any)
SIMAT_1.37.0.tar.gz(r-4.5-noble)SIMAT_1.37.0.tar.gz(r-4.4-noble)
SIMAT_1.37.0.tgz(r-4.4-emscripten)SIMAT_1.37.0.tgz(r-4.3-emscripten)
SIMAT.pdf |SIMAT.html✨
SIMAT/json (API)
NEWS
| # Install 'SIMAT' in R: |
| install.packages('SIMAT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Library - Extracted compound information from an MSL library.
- RItable - Extracted RI standard information from a 'csv' file.
- Run - Extracted peaks from one SIM run.
- Targets - Targets information in a list.
- target.table - Extracted target information from a 'csv' file.
On BioConductor:SIMAT-1.37.0(bioc 3.20)SIMAT-1.36.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:f034495dc2
Exports:getEICgetPeakgetPeakScoregetRIgetRIStandardgetScoregetTargetgetTargetTableoptFragplotEICplotTICputTargetTablereadCDFreadMSLwriteMSLwriteResult
Dependencies:BiobaseBiocGenericsclicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellmzRncdf4nlmepillarpkgconfigplyrProtGenericsR6RColorBrewerRcppreshape2Rhdf5librlangscalesstringistringrtibbleutf8vctrsviridisLitewithr
