Package: SIMAT 1.39.0

M. R. Nezami Ranjbar

SIMAT: GC-SIM-MS data processing and alaysis tool

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

Authors:M. R. Nezami Ranjbar <[email protected]>

SIMAT_1.39.0.tar.gz
SIMAT_1.39.0.zip(r-4.5)SIMAT_1.39.0.zip(r-4.4)SIMAT_1.39.0.zip(r-4.3)
SIMAT_1.39.0.tgz(r-4.4-any)SIMAT_1.39.0.tgz(r-4.3-any)
SIMAT_1.39.0.tar.gz(r-4.5-noble)SIMAT_1.39.0.tar.gz(r-4.4-noble)
SIMAT_1.39.0.tgz(r-4.4-emscripten)SIMAT_1.39.0.tgz(r-4.3-emscripten)
SIMAT.pdf |SIMAT.html✨
SIMAT/json (API)
NEWS

# Install 'SIMAT' in R:
install.packages('SIMAT', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Library - Extracted compound information from an MSL library.
  • RItable - Extracted RI standard information from a 'csv' file.
  • Run - Extracted peaks from one SIM run.
  • Targets - Targets information in a list.
  • target.table - Extracted target information from a 'csv' file.

On BioConductor:SIMAT-1.39.0(bioc 3.21)SIMAT-1.38.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologysoftwaremetabolomicsmassspectrometry

4.26 score 1 scripts 212 downloads 9 mentions 16 exports 40 dependencies

Last updated 2 months agofrom:bb9e28837d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 30 2024
R-4.5-winOKNov 30 2024
R-4.5-linuxOKNov 30 2024
R-4.4-winOKNov 30 2024
R-4.4-macOKNov 30 2024
R-4.3-winOKNov 30 2024
R-4.3-macOKNov 30 2024

Exports:getEICgetPeakgetPeakScoregetRIgetRIStandardgetScoregetTargetgetTargetTableoptFragplotEICplotTICputTargetTablereadCDFreadMSLwriteMSLwriteResult

Dependencies:BiobaseBiocGenericsclicolorspacefansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellmzRncdf4nlmepillarpkgconfigplyrProtGenericsR6RColorBrewerRcppreshape2Rhdf5librlangscalesstringistringrtibbleutf8vctrsviridisLitewithr

SIMAT Usage

Rendered fromSIMAT-vignette.Rnwusingutils::Sweaveon Nov 30 2024.

Last update: 2018-08-03
Started: 2015-03-13