Introduction | Overview | Data preparation | Example: Breast cancer | Extensions of the model
Package: SIM 1.83.0
Renee X. de Menezes
SIM: Integrated Analysis on two human genomic datasets
Finds associations between two human genomic datasets.
Authors:
SIM_1.83.0.tar.gz
SIM_1.83.0.zip(r-4.7)SIM_1.83.0.zip(r-4.6)SIM_1.83.0.zip(r-4.5)
SIM_1.83.0.tgz(r-4.6-x86_64)SIM_1.83.0.tgz(r-4.6-arm64)SIM_1.83.0.tgz(r-4.5-x86_64)SIM_1.83.0.tgz(r-4.5-arm64)
SIM_1.83.0.tar.gz(r-4.7-arm64)SIM_1.83.0.tar.gz(r-4.7-x86_64)SIM_1.83.0.tar.gz(r-4.6-arm64)SIM_1.83.0.tar.gz(r-4.6-x86_64)
SIM_1.83.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SIM/json (API)
| # Install 'SIM' in R: |
| install.packages('SIM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- acgh.data - Array Comparative Genomic Hybridization data
- chrom.table - Table with chromosome information
- expr.data - Expression data example
- samples - Samples for example data
On BioConductor:SIM-1.83.0(bioc 3.24)SIM-1.82.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:6fd83a1167. Checks:1 ERROR, 11 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 182 | ||
| linux-devel-arm64 | WARNING | 248 | ||
| linux-devel-x86_64 | WARNING | 258 | ||
| source / vignettes | OK | 258 | ||
| linux-release-arm64 | WARNING | 230 | ||
| linux-release-x86_64 | WARNING | 263 | ||
| macos-release-arm64 | WARNING | 145 | ||
| macos-release-x86_64 | WARNING | 298 | ||
| macos-oldrel-arm64 | WARNING | 148 | ||
| macos-oldrel-x86_64 | WARNING | 257 | ||
| windows-devel | WARNING | 184 | ||
| windows-release | WARNING | 189 | ||
| windows-oldrel | WARNING | 177 | ||
| wasm-release | OK | 131 |
Exports:assemble.datagetoverlappingregionsimpute.nas.by.surroundingintegrated.analysislink.metadataRESOURCERER.annotation.to.IDsim.plot.overlapping.indep.dep.featuressim.plot.pvals.on.genomesim.plot.pvals.on.regionsim.plot.zoom.insim.plot.zscore.heatmapsim.update.chrom.tabletabulate.pvalstabulate.top.dep.featurestabulate.top.indep.features
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsglobaltestgluehttrIRangesjsonliteKEGGRESTlatticelifecycleMASSMatrixMatrixModelsmemoisemimeopensslpkgconfigpngquantregquantsmoothR6rlangRSQLiteS4VectorsSeqinfoSparseMsurvivalsysvctrsXMLxtableXVector
