Package: SIM 1.75.0
SIM: Integrated Analysis on two human genomic datasets
Finds associations between two human genomic datasets.
Authors:
SIM_1.75.0.tar.gz
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SIM.pdf |SIM.html✨
SIM/json (API)
# Install 'SIM' in R: |
install.packages('SIM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- acgh.data - Array Comparative Genomic Hybridization data
- chrom.table - Table with chromosome information
- expr.data - Expression data example
- samples - Samples for example data
On BioConductor:SIM-1.75.0(bioc 3.20)SIM-1.74.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:e7c61ef8cb
Exports:assemble.datagetoverlappingregionsimpute.nas.by.surroundingintegrated.analysislink.metadataRESOURCERER.annotation.to.IDsim.plot.overlapping.indep.dep.featuressim.plot.pvals.on.genomesim.plot.pvals.on.regionsim.plot.zoom.insim.plot.zscore.heatmapsim.update.chrom.tabletabulate.pvalstabulate.top.dep.featurestabulate.top.indep.features
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDataglobaltestgluehttrIRangesjsonliteKEGGRESTlatticelifecycleMASSMatrixMatrixModelsmemoisemimeopensslpkgconfigplogrpngquantregquantsmoothR6rlangRSQLiteS4VectorsSparseMsurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc