Package: SCnorm 1.29.0

Rhonda Bacher

SCnorm: Normalization of single cell RNA-seq data

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Authors:Rhonda Bacher

SCnorm_1.29.0.tar.gz
SCnorm_1.29.0.zip(r-4.5)SCnorm_1.29.0.zip(r-4.4)SCnorm_1.29.0.zip(r-4.3)
SCnorm_1.29.0.tgz(r-4.4-any)SCnorm_1.29.0.tgz(r-4.3-any)
SCnorm_1.29.0.tar.gz(r-4.5-noble)SCnorm_1.29.0.tar.gz(r-4.4-noble)
SCnorm_1.29.0.tgz(r-4.4-emscripten)SCnorm_1.29.0.tgz(r-4.3-emscripten)
SCnorm.pdf |SCnorm.html✨
SCnorm/json (API)
NEWS

# Install 'SCnorm' in R:
install.packages('SCnorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rhondabacher/scnorm/issues

Datasets:

On BioConductor:SCnorm-1.29.0(bioc 3.21)SCnorm-1.28.0(bioc 3.20)

normalizationrnaseqsinglecellimmunooncology

8.48 score 47 stars 80 scripts 280 downloads 15 mentions 7 exports 71 dependencies

Last updated 23 days agofrom:d1d79f259a. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:getCountsgetSlopesplotCountDepthplotWithinFactorresultsscaleNormMultContSCnorm

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelcliclustercodetoolscolorspacecpp11crayoncurldata.tableDelayedArrayfansifarverforcatsformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmgcvmimemomentsmunsellnlmeopensslpillarpkgconfigquantregR6RColorBrewerrlangS4ArraysS4VectorsscalesSingleCellExperimentsnowSparseArraySparseMSummarizedExperimentsurvivalsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc

SCnorm Vignette

Rendered fromSCnorm.Rnwusingknitr::knitron Oct 31 2024.

Last update: 2020-03-25
Started: 2016-11-12