Package: SCnorm 1.29.0

Rhonda Bacher

SCnorm: Normalization of single cell RNA-seq data

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Authors:Rhonda Bacher

SCnorm_1.29.0.tar.gz
SCnorm_1.29.0.zip(r-4.5)SCnorm_1.29.0.zip(r-4.4)SCnorm_1.29.0.zip(r-4.3)
SCnorm_1.29.0.tgz(r-4.5-any)SCnorm_1.29.0.tgz(r-4.4-any)SCnorm_1.29.0.tgz(r-4.3-any)
SCnorm_1.29.0.tar.gz(r-4.5-noble)SCnorm_1.29.0.tar.gz(r-4.4-noble)
SCnorm_1.29.0.tgz(r-4.4-emscripten)SCnorm_1.29.0.tgz(r-4.3-emscripten)
SCnorm.pdf |SCnorm.html✨
SCnorm/json (API)
NEWS

# Install 'SCnorm' in R:
install.packages('SCnorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rhondabacher/scnorm/issues

Datasets:

On BioConductor:SCnorm-1.29.0(bioc 3.21)SCnorm-1.28.0(bioc 3.20)

normalizationrnaseqsinglecellimmunooncology

8.46 score 47 stars 76 scripts 319 downloads 15 mentions 7 exports 71 dependencies

Last updated 5 months agofrom:d1d79f259a. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 28 2025
R-4.5-winOKFeb 28 2025
R-4.5-macOKFeb 28 2025
R-4.5-linuxOKFeb 28 2025
R-4.4-winOKFeb 28 2025
R-4.4-macOKFeb 28 2025
R-4.3-winOKFeb 28 2025
R-4.3-macOKFeb 28 2025

Exports:getCountsgetSlopesplotCountDepthplotWithinFactorresultsscaleNormMultContSCnorm

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocParallelcliclustercodetoolscolorspacecpp11crayoncurldata.tableDelayedArrayfansifarverforcatsformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmgcvmimemomentsmunsellnlmeopensslpillarpkgconfigquantregR6RColorBrewerrlangS4ArraysS4VectorsscalesSingleCellExperimentsnowSparseArraySparseMSummarizedExperimentsurvivalsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVector

SCnorm Vignette

Rendered fromSCnorm.Rnwusingknitr::knitron Feb 28 2025.

Last update: 2020-03-25
Started: 2016-11-12