Package: RnaSeqSampleSize 2.15.0
RnaSeqSampleSize: RnaSeqSampleSize
RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data. It controls FDR for multiple testing and utilizes the average read count and dispersion distributions from real data to estimate a more reliable sample size. It is also equipped with several unique features, including estimation for interested genes or pathway, power curve visualization, and parameter optimization.
Authors:
RnaSeqSampleSize_2.15.0.tar.gz
RnaSeqSampleSize_2.15.0.zip(r-4.5)RnaSeqSampleSize_2.15.0.zip(r-4.4)RnaSeqSampleSize_2.15.0.zip(r-4.3)
RnaSeqSampleSize_2.15.0.tgz(r-4.4-arm64)RnaSeqSampleSize_2.15.0.tgz(r-4.4-x86_64)RnaSeqSampleSize_2.15.0.tgz(r-4.3-arm64)RnaSeqSampleSize_2.15.0.tgz(r-4.3-x86_64)
RnaSeqSampleSize_2.15.0.tar.gz(r-4.5-noble)RnaSeqSampleSize_2.15.0.tar.gz(r-4.4-noble)
RnaSeqSampleSize_2.15.0.tgz(r-4.4-emscripten)RnaSeqSampleSize_2.15.0.tgz(r-4.3-emscripten)
RnaSeqSampleSize.pdf |RnaSeqSampleSize.html✨
RnaSeqSampleSize/json (API)
NEWS
# Install 'RnaSeqSampleSize' in R: |
install.packages('RnaSeqSampleSize', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:RnaSeqSampleSize-2.15.0(bioc 3.20)RnaSeqSampleSize-2.14.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:7b4b5009ab
Exports:analyze_datasetconvertIdOneToOneest_count_dispersionest_powerest_power_curveest_power_distributionoptimize_parameterplot_gene_counts_rangeplot_mappedReads_percentplot_power_curvesample_sizesample_size_distribution
Dependencies:abindAnnotationDbiaskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobbootbroomBSgenomebslibbumphuntercachemcarcarDatacheckmateclicliprclustercodetoolscolorspacecorrplotcowplotcpp11crayoncurldata.tableDBIdbplyrDelayedArrayderfinderderfinderHelperDerivdigestdoBydoRNGdownloaderdplyredgeRevaluatefansifarverfastclusterfastmapfilelockfontawesomeforeachforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicFilesGenomicRangesGEOqueryggplot2ggpubrggrepelggsciggsignifgluegridExtragtableheatmap3highrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2IRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclelimmalme4locfitmagrittrMASSmatlabMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplogrplyrpngpolynomprettyunitsprogresspurrrquantregqvalueR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppEigenRCurlreadrrecountrentrezreshape2restfulrRhtslibrjsonrlangrmarkdownRnaSeqSampleSizeDatarngtoolsrpartRsamtoolsRSQLiterstatixrstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytextzdbUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitevroomwithrxfunXMLxml2XVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
analyze_dataset | analyze_dataset |
convertId | convertIdOneToOne |
est_count_dispersion | est_count_dispersion |
est_power | est_power |
est_power_curve | est_power_curve |
est_power_distribution | est_power_distribution |
optimize_parameter | optimize_parameter |
plot_gene_counts_range | plot_gene_counts_range |
plot_mappedReads_percent | plot_mappedReads_percent |
plot_power_curve | plot_power_curve |
sample_size | sample_size |
sample_size_distribution | sample_size_distribution |