NEWS
RnaSeqSampleSize 2.5.1 (2021-12-02)
NEW FEATURES
- Support defining ratio of sample size between two groups by parameter k
BUG FIXES
- Change website URL in vignette
- Not-Run some example codes
RnaSeqSampleSize 1.99.3 (2020-10-23)
BUG FIXES
- Change codes to make the package pass all Rcmd check with R 4.0.3
RnaSeqSampleSize 1.19.2 (2020-10-02)
BUG FIXES
- Change codes to make the package pass all Rcmd check with R 4.0
RnaSeqSampleSize 1.19.1 (2020-09-30)
BUG FIXES
- Fix a bug in est_power_distribution, which make results incorrect when power is very large.
RnaSeqSampleSize 1.15.1 (2018-11-12)
BUG FIXES
- Fix a bug in power estiamtion (cumsumBorder.cpp), which make results incorrect when k not equal to one.
RnaSeqSampleSize 1.9.1 (2017-08-03)
BUG FIXES
- Fix a bug about estimating genes in pathway power in est_power_distribution function, which was caused by update of KEGG web site.
RnaSeqSampleSize 0.99.8 (2015-04-12)
BUG FIXES
- Fix a bug in example of optimize_parameter function, which was caused by update of heatmap3 package. Thanks Dan.
RnaSeqSampleSize 0.99.7 (2015-04-06)
BUG FIXES
- Fix a bug in example of convertId function, which was caused by update of BioMart database. Thanks Dan.
RnaSeqSampleSize 0.99.5 (2015-04-06)
SIGNIFICANT USER-VISIBLE CHANGES
- Minor changes for genes with less than 1 read count;
RnaSeqSampleSize 0.99.4
NEW FEATURES
- The user friendly web interface was improved
BUG FIXES
- Bug fixed: Max sample size for distribution based sample size estimation;
- Bug fixed: Keep consistent for all function names;
SIGNIFICANT USER-VISIBLE CHANGES
- Other improvement based on the comments from Bioconductor reviewer;
RnaSeqSampleSize 0.99.3 (2014-11-23)
SIGNIFICANT USER-VISIBLE CHANGES
- New parameter: countFilterInRawDistribution, selectedGeneFilterByCount;
- Other improvement based on the comments from Bioconductor reviewer;
RnaSeqSampleSize 0.99.2
SIGNIFICANT USER-VISIBLE CHANGES
- The vignette was switched to a BiocStyle;
- Other improvement based on the comments from Bioconductor reviewer;
RnaSeqSampleSize 0.99.1 (2014-10-19)
SIGNIFICANT USER-VISIBLE CHANGES
- Parameter was used to determine the power of genes below minAveCount;
- Some recommendations from BiocCheck were improved;
RnaSeqSampleSize 0.99.0 (2014-10-16)
SIGNIFICANT USER-VISIBLE CHANGES
RnaSeqSampleSize 0.5.0 (2014-10-15)
NEW FEATURES
- The datasets from TCGA were moved to RnaSeqSampleSizeData package;
- The examples were improved;
- The vignette was generated;
RnaSeqSampleSize 0.4.0 (2014-10-10)
NEW FEATURES
- Rcpp package was used to make some functions faster;
- The package structure was improved;
- The web interface was improved;
RnaSeqSampleSize 0.3.0 (2014-08-01)
NEW FEATURES
- Beta approximate method was improved and used in most of the cases;
- Read count and dispersion distribution estimation function was improved;
- Estimation power or sample size by read count and dispersion distribution was improved.
RnaSeqSampleSize 0.2.0 (2014-06-01)
NEW FEATURES
- The function of estimation power or sample size by read count and dispersion distribution was imported and improved.
RnaSeqSampleSize 0.1.7 (2014-03-30)
SIGNIFICANT USER-VISIBLE CHANGES
- An approximate estimation method was used to decrease the running time when average read count (lambda0) was larger than 20;
NEW FEATURES
- A plotting power curve function plot_power_curve was provided;
RnaSeqSampleSize 0.1.6 (2014-03-19)
SIGNIFICANT USER-VISIBLE CHANGES
- The code was improved to fit the web interface;
NEW FEATURES
- The function est_power was provided for power estimation;
BUG FIXES
RnaSeqSampleSize 0.1.5 (2014-03-16)
SIGNIFICANT USER-VISIBLE CHANGES
- The C code for R function dnbinom was improved to decrease the running time greatly;
- The powers for different N in estimating sample size were returned to prepare power curve;
RnaSeqSampleSize 0.1.4 (2014-03-01)
NEW FEATURES
- A user friendly web interface was provided at http://cqs.mc.vanderbilt.edu/shiny/RnaSeqSampleSize/;
RnaSeqSampleSize 0.1.3 (2014-02-17)
SIGNIFICANT USER-VISIBLE CHANGES
- The algorithm was improved to decrease the memory usage;
RnaSeqSampleSize 0.1.2 (2014-02-04)
SIGNIFICANT USER-VISIBLE CHANGES
- A more detail parameter to sample size table was provided;
- The algorithm was improved to decrease the running time and memory usage;
RnaSeqSampleSize 0.1.1 (2014-02-04)
SIGNIFICANT USER-VISIBLE CHANGES
- The algorithm was improved to decrease the running time greatly;
RnaSeqSampleSize 0.1.0 (2014-01-24)
SIGNIFICANT USER-VISIBLE CHANGES
- A more detail parameter to sample size table was provided to make sample size estimation faster;
- An estimated time to perform sample size estimation will be displayed;
BUG FIXES
- A bug fixed when sample size N equals to 1;
RnaSeqSampleSize 0.0.1 (2014-01-10)
SIGNIFICANT USER-VISIBLE CHANGES