Package: RhyME 0.99.3

Yixiang Hong

RhyME: Beta Regression Cosinor Models for Circadian Methylation Analysis

Fits beta cosinor models to methylation measurements using penalized quasi-likelihood (PQL), an optional subject random intercept, adjustment covariates, and an optional empirical Bayes (EB) prior on log precision. Tests rhythmicity with a null-model score test and estimates rhythm parameters from a separate full-model fit.

Authors:Yixiang Hong [aut, cre]

RhyME_0.99.3.tar.gz
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RhyME_0.99.3.tgz(r-4.6-x86_64)RhyME_0.99.3.tgz(r-4.6-arm64)RhyME_0.99.3.tgz(r-4.5-x86_64)RhyME_0.99.3.tgz(r-4.5-arm64)
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RhyME_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RhyME/json (API)

# Install 'RhyME' in R:

install.packages('RhyME', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/njuelsdke/rhyme/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

epigenetics dnamethylation methylationarray timecourse regression differentialmethylation cpp

3.30 score 2 exports 44 dependencies

Last updated from:4056e74f25. Checks:1 NOTE, 15 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	181
linux-devel-arm64	OK	300
linux-devel-x86_64	OK	391
source / vignettes	OK	387
linux-release-arm64	OK	262
linux-release-x86_64	OK	379
macos-release-arm64	OK	209
macos-release-x86_64	OK	393
macos-oldrel-arm64	OK	221
macos-oldrel-x86_64	OK	409
windows-devel-arm64	OK	355
windows-devel-x86_64	OK	2189
windows-release-arm64	OK	351
windows-release-x86_64	OK	215
windows-oldrel-x86_64	OK	2176
wasm-release	OK	163