Package: Rgraphviz 2.51.0
Kasper Daniel Hansen
Rgraphviz: Provides plotting capabilities for R graph objects
Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.
Authors:
Rgraphviz_2.51.0.tar.gz
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Rgraphviz.pdf |Rgraphviz.html✨
Rgraphviz/json (API)
NEWS
| # Install 'Rgraphviz' in R: |
| install.packages('Rgraphviz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:Rgraphviz-2.51.0(bioc 3.21)Rgraphviz-2.50.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 22 days agofrom:86e5661dcc. Checks:OK: 1 WARNING: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 14 2024 |
| R-4.5-win-x86_64 | WARNING | Nov 14 2024 |
| R-4.5-linux-x86_64 | WARNING | Nov 14 2024 |
| R-4.4-win-x86_64 | WARNING | Nov 14 2024 |
| R-4.4-mac-x86_64 | WARNING | Nov 14 2024 |
| R-4.4-mac-aarch64 | WARNING | Nov 14 2024 |
| R-4.3-win-x86_64 | WARNING | Nov 14 2024 |
| R-4.3-mac-x86_64 | WARNING | Nov 14 2024 |
| R-4.3-mac-aarch64 | WARNING | Nov 14 2024 |
Exports:AgEdgeAgEdge<-AgNodeAgNode<-agopenagopenSimpleagraphagreadagwritearrowheadarrowsizearrowtailbezierPointsbLinesbotLeftboundBoxbuildEdgeListbuildNodeListcheckAttrsclusterDataclusterData<-colorcPointsdrawAgNodedrawTxtLabeledgeDataedgeData<-edgeDataDefaultsedgeDataDefaults<-edgemodeedgeNamesepfillcolorfromgetDefaultAttrsgetNodeCentergetNodeHeightgetNodeLabelsgetNodeLWgetNodeNamesgetNodeRWgetNodeXYgetPointsgetSplinegetXgetYgraphDatagraphData<-graphDataDefaultsgraphDataDefaults<-graphLayoutgraphvizCapabilitiesgraphvizVersionheadlabelColorlabelFontsizelabelJustlabelLoclabelTextlabelWidthlaidoutlayoutGraphlayoutTypelinesmakeNodeAttrsnamenodeDatanodeData<-nodeDataDefaultsnodeDataDefaults<-numSplinespieGlyphplotpointListremovedEdgesrenderGraphshapeshowspsplinesstyletailtotoDottoFiletxtLabelupRight
Dependencies:BiocGenericsgenericsgraph
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class "AgEdge": A class to describe an edge for a Ragraph object | AgEdge AgEdge-class AgEdge<- arrowhead arrowhead,AgEdge-method arrowsize arrowsize,AgEdge-method arrowtail arrowtail,AgEdge-method color,AgEdge-method ep ep,AgEdge-method getSpline getSpline,AgEdge-method head head,AgEdge-method lines,AgEdge-method numSplines numSplines,AgEdge-method show,AgEdge-method sp sp,AgEdge-method splines splines,AgEdge-method tail tail,AgEdge-method txtLabel txtLabel,AgEdge-method |
| Class "AgNode": A class to describe a node for a Ragraph object | AgNode AgNode-class AgNode<- color color,AgNode-method drawAgNode fillcolor fillcolor,AgNode-method getNodeCenter getNodeCenter,AgNode-method getNodeHeight getNodeHeight,AgNode-method getNodeLW getNodeLW,AgNode-method getNodeRW getNodeRW,AgNode-method getNodeXY,AgNode-method getRadiusDiv name name,AgNode-method shape shape,AgNode-method style style,AgNode-method txtLabel,AgNode-method |
| A function to obtain a libgraph object | agopen |
| A function to obtain a Ragraph object | agopenSimple |
| Class "AgTextLabel": Represents a graphviz text label | AgTextLabel-class drawTxtLabel labelColor labelColor,AgTextLabel-method labelFontsize labelFontsize,AgTextLabel-method labelJust labelJust,AgTextLabel-method labelLoc labelLoc,AgTextLabel-method labelText labelText,AgTextLabel-method labelWidth labelWidth,AgTextLabel-method |
| Read / write Ragraph objects | agread agwrite |
| Class "BezierCurve": A class to describe a Bezier curve | BezierCurve BezierCurve-class bezierPoints bezierPoints,BezierCurve-method bLines bLines,BezierCurve-method cPoints cPoints,BezierCurve-method lines,BezierCurve-method pointList pointList,BezierCurve-method show,BezierCurve-method |
| Class "boundingBox": A class to describe the bounding box of a Ragraph | botLeft botLeft,boundingBox-method boundingBox boundingBox-class upRight upRight,boundingBox-method |
| A function to build lists of node and edge objects | buildEdgeList buildNodeList edgeL,clusterGraph-method edgeL,distGraph-method |
| Get and set attributes for a cluster of an Ragraph object | clusterData clusterData-methods clusterData<- clusterData<--methods |
| Functions to generate and check global attribute lists | checkAttrs getDefaultAttrs |
| Get and set attributes of an Ragraph object | graphData graphData-methods graphData<- graphData<--methods |
| Get and set default attributes for an Ragraph | graphDataDefaults graphDataDefaults-methods graphDataDefaults<- graphDataDefaults<--methods |
| A function to layout graph locations | graphLayout |
| Graph Attributes for Rgraphviz | edgeAttributes graphAttributes graphviz GraphvizAttributes nodeAttributes |
| List capabilities of Graphviz | graphvizCapabilities |
| Graphviz Layout Methods | circo dot fdp GraphvizLayouts neato twopi |
| A function to determine graphviz library version | graphvizVersion |
| A function to compute layouts of graph objects | layoutGraph |
| make a list of character vectors that can be used as a value for the nodeAttrs argument in agopen | makeNodeAttrs |
| Class "pEdge": A class to represent an edge | from from,pEdge-method pEdge pEdge-class to to,pEdge-method |
| A function to plot pie graphs as a glyph | pieGlyph |
| Plot a graph object - methods | plot,graph,ANY-method plot,Ragraph,ANY-method plot.graph plot.graphNEL plot.Ragraph |
| Class "pNode": A class to plot nodes | name,pNode-method pNode pNode-class |
| Class "Ragraph": A class to handle libgraph representations | AgEdge,Ragraph-method AgEdge<-,Ragraph-method AgNode,Ragraph-method AgNode<-,Ragraph-method agraph agraph,Ragraph-method boundBox boundBox,Ragraph-method clusterData,Ragraph,numeric,vector-method clusterData<-,Ragraph,numeric,vector,vector-method edgeData,Ragraph,vector,vector,vector-method edgeData<-,Ragraph,vector,vector,vector,vector-method edgeDataDefaults,Ragraph,missing-method edgeDataDefaults<-,Ragraph,vector,vector-method edgemode edgemode,Ragraph-method edgeNames,Ragraph-method getNodeHeight,Ragraph-method getNodeLabels getNodeLW,Ragraph-method getNodeNames getNodeRW,Ragraph-method getNodeXY getNodeXY,Ragraph-method graphData,Ragraph,vector-method graphData<-,Ragraph,vector,vector-method graphDataDefaults,Ragraph-method graphDataDefaults<-,Ragraph,vector,vector-method laidout laidout,Ragraph-method layoutType layoutType,Ragraph-method nodeData,Ragraph,vector,vector-method nodeData<-,Ragraph,vector,vector,vector-method nodeDataDefaults,Ragraph,missing-method nodeDataDefaults<-,Ragraph,vector,vector-method Ragraph Ragraph-class show,Ragraph-method |
| A Function To List Removed Edges | removedEdges |
| Render a laid out graph object | renderGraph renderGraph,graph-method |
| A Generic For Converting Objects To Dot | toDot toDot,graph-method toDot-methods |
| Render a graph in a file with given format | toFile |
| Class "xyPoint": A class to represent a X/Y coordinate. | getPoints getPoints,xyPoint-method getX getX,xyPoint-method getY getY,xyPoint-method show,xyPoint-method xyPoint xyPoint-class |
