Package: Rgraphviz 2.51.0

Kasper Daniel Hansen

Rgraphviz: Provides plotting capabilities for R graph objects

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Authors:Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]

Rgraphviz_2.51.0.tar.gz
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Rgraphviz/json (API)
NEWS

# Install 'Rgraphviz' in R:
install.packages('Rgraphviz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • zlib– Compression library

On BioConductor:Rgraphviz-2.51.0(bioc 3.21)Rgraphviz-2.50.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

graphandnetworkvisualization

11.25 score 114 packages 1.3k scripts 14k downloads 33 mentions 87 exports 3 dependencies

Last updated 1 months agofrom:86e5661dcc. Checks:OK: 1 WARNING: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-win-x86_64WARNINGNov 14 2024
R-4.5-linux-x86_64WARNINGNov 14 2024
R-4.4-win-x86_64WARNINGNov 14 2024
R-4.4-mac-x86_64WARNINGNov 14 2024
R-4.4-mac-aarch64WARNINGNov 14 2024
R-4.3-win-x86_64WARNINGNov 14 2024
R-4.3-mac-x86_64WARNINGNov 14 2024
R-4.3-mac-aarch64WARNINGNov 14 2024

Exports:AgEdgeAgEdge<-AgNodeAgNode<-agopenagopenSimpleagraphagreadagwritearrowheadarrowsizearrowtailbezierPointsbLinesbotLeftboundBoxbuildEdgeListbuildNodeListcheckAttrsclusterDataclusterData<-colorcPointsdrawAgNodedrawTxtLabeledgeDataedgeData<-edgeDataDefaultsedgeDataDefaults<-edgemodeedgeNamesepfillcolorfromgetDefaultAttrsgetNodeCentergetNodeHeightgetNodeLabelsgetNodeLWgetNodeNamesgetNodeRWgetNodeXYgetPointsgetSplinegetXgetYgraphDatagraphData<-graphDataDefaultsgraphDataDefaults<-graphLayoutgraphvizCapabilitiesgraphvizVersionheadlabelColorlabelFontsizelabelJustlabelLoclabelTextlabelWidthlaidoutlayoutGraphlayoutTypelinesmakeNodeAttrsnamenodeDatanodeData<-nodeDataDefaultsnodeDataDefaults<-numSplinespieGlyphplotpointListremovedEdgesrenderGraphshapeshowspsplinesstyletailtotoDottoFiletxtLabelupRight

Dependencies:BiocGenericsgenericsgraph

A New Interface to Plot Graphs Using Rgraphviz

Rendered fromnewRgraphvizInterface.Rnwusingutils::Sweaveon Nov 14 2024.

Last update: 2014-04-11
Started: 2014-04-11

How To Plot A Graph Using Rgraphviz

Rendered fromRgraphviz.Rnwusingutils::Sweaveon Nov 14 2024.

Last update: 2014-04-11
Started: 2014-04-11

Readme and manuals

Help Manual

Help pageTopics
Class "AgEdge": A class to describe an edge for a Ragraph objectAgEdge AgEdge-class AgEdge<- arrowhead arrowhead,AgEdge-method arrowsize arrowsize,AgEdge-method arrowtail arrowtail,AgEdge-method color,AgEdge-method ep ep,AgEdge-method getSpline getSpline,AgEdge-method head head,AgEdge-method lines,AgEdge-method numSplines numSplines,AgEdge-method show,AgEdge-method sp sp,AgEdge-method splines splines,AgEdge-method tail tail,AgEdge-method txtLabel txtLabel,AgEdge-method
Class "AgNode": A class to describe a node for a Ragraph objectAgNode AgNode-class AgNode<- color color,AgNode-method drawAgNode fillcolor fillcolor,AgNode-method getNodeCenter getNodeCenter,AgNode-method getNodeHeight getNodeHeight,AgNode-method getNodeLW getNodeLW,AgNode-method getNodeRW getNodeRW,AgNode-method getNodeXY,AgNode-method getRadiusDiv name name,AgNode-method shape shape,AgNode-method style style,AgNode-method txtLabel,AgNode-method
A function to obtain a libgraph objectagopen
A function to obtain a Ragraph objectagopenSimple
Class "AgTextLabel": Represents a graphviz text labelAgTextLabel-class drawTxtLabel labelColor labelColor,AgTextLabel-method labelFontsize labelFontsize,AgTextLabel-method labelJust labelJust,AgTextLabel-method labelLoc labelLoc,AgTextLabel-method labelText labelText,AgTextLabel-method labelWidth labelWidth,AgTextLabel-method
Read / write Ragraph objectsagread agwrite
Class "BezierCurve": A class to describe a Bezier curveBezierCurve BezierCurve-class bezierPoints bezierPoints,BezierCurve-method bLines bLines,BezierCurve-method cPoints cPoints,BezierCurve-method lines,BezierCurve-method pointList pointList,BezierCurve-method show,BezierCurve-method
Class "boundingBox": A class to describe the bounding box of a RagraphbotLeft botLeft,boundingBox-method boundingBox boundingBox-class upRight upRight,boundingBox-method
A function to build lists of node and edge objectsbuildEdgeList buildNodeList edgeL,clusterGraph-method edgeL,distGraph-method
Get and set attributes for a cluster of an Ragraph objectclusterData clusterData-methods clusterData<- clusterData<--methods
Functions to generate and check global attribute listscheckAttrs getDefaultAttrs
Get and set attributes of an Ragraph objectgraphData graphData-methods graphData<- graphData<--methods
Get and set default attributes for an RagraphgraphDataDefaults graphDataDefaults-methods graphDataDefaults<- graphDataDefaults<--methods
A function to layout graph locationsgraphLayout
Graph Attributes for RgraphvizedgeAttributes graphAttributes graphviz GraphvizAttributes nodeAttributes
List capabilities of GraphvizgraphvizCapabilities
Graphviz Layout Methodscirco dot fdp GraphvizLayouts neato twopi
A function to determine graphviz library versiongraphvizVersion
A function to compute layouts of graph objectslayoutGraph
make a list of character vectors that can be used as a value for the nodeAttrs argument in agopenmakeNodeAttrs
Class "pEdge": A class to represent an edgefrom from,pEdge-method pEdge pEdge-class to to,pEdge-method
A function to plot pie graphs as a glyphpieGlyph
Plot a graph object - methodsplot,graph,ANY-method plot,Ragraph,ANY-method plot.graph plot.graphNEL plot.Ragraph
Class "pNode": A class to plot nodesname,pNode-method pNode pNode-class
Class "Ragraph": A class to handle libgraph representationsAgEdge,Ragraph-method AgEdge<-,Ragraph-method AgNode,Ragraph-method AgNode<-,Ragraph-method agraph agraph,Ragraph-method boundBox boundBox,Ragraph-method clusterData,Ragraph,numeric,vector-method clusterData<-,Ragraph,numeric,vector,vector-method edgeData,Ragraph,vector,vector,vector-method edgeData<-,Ragraph,vector,vector,vector,vector-method edgeDataDefaults,Ragraph,missing-method edgeDataDefaults<-,Ragraph,vector,vector-method edgemode edgemode,Ragraph-method edgeNames,Ragraph-method getNodeHeight,Ragraph-method getNodeLabels getNodeLW,Ragraph-method getNodeNames getNodeRW,Ragraph-method getNodeXY getNodeXY,Ragraph-method graphData,Ragraph,vector-method graphData<-,Ragraph,vector,vector-method graphDataDefaults,Ragraph-method graphDataDefaults<-,Ragraph,vector,vector-method laidout laidout,Ragraph-method layoutType layoutType,Ragraph-method nodeData,Ragraph,vector,vector-method nodeData<-,Ragraph,vector,vector,vector-method nodeDataDefaults,Ragraph,missing-method nodeDataDefaults<-,Ragraph,vector,vector-method Ragraph Ragraph-class show,Ragraph-method
A Function To List Removed EdgesremovedEdges
Render a laid out graph objectrenderGraph renderGraph,graph-method
A Generic For Converting Objects To DottoDot toDot,graph-method toDot-methods
Render a graph in a file with given formattoFile
Class "xyPoint": A class to represent a X/Y coordinate.getPoints getPoints,xyPoint-method getX getX,xyPoint-method getY getY,xyPoint-method show,xyPoint-method xyPoint xyPoint-class